RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZNRF2Q8NHG8 242 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.94□□□□□ -0.5
VPS29-204ENST00000548259 CACFD1Q9UGQ2 172 aa11.94□□□□□ -0.5
VPS29-204ENST00000548259 LYRM9A8MSI8 78 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 NUDT3O95989 172 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 RORCP51449 518 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 ZNF79Q15937 498 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 OR8G2PQ6IF36 304 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 SLC24A4Q8NFF2 622 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 OR51G1Q8NGK1 321 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 NPIPB3Q92617 1050 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 ACY3Q96HD9 319 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 PBDC1Q9BVG4 233 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 SLC35B3Q9H1N7 401 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 Q9H521 79 aa11.93□□□□□ -0.5
VPS29-204ENST00000548259 CLINT1Q14677 625 aa11.92□□□□□ -0.5
VPS29-204ENST00000548259 C1orf194Q5T5A4 169 aa11.92□□□□□ -0.5
VPS29-204ENST00000548259 ZFAND1Q8TCF1 268 aa11.92□□□□□ -0.5
VPS29-204ENST00000548259 RNF125Q96EQ8 232 aa11.92□□□□□ -0.5
VPS29-204ENST00000548259 CEBPZOSA8MTT3 80 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 ANKRD65E5RJM6 399 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 F5H768 121 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 ISLRO14498 428 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 FABP1P07148 127 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 PSG1P11464 419 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 PI3P19957 117 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 PAX9P55771 341 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 B2MP61769 119 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 RNASE10Q5GAN6 216 aaKnown RBP11.91□□□□□ -0.5
VPS29-204ENST00000548259 TTC32Q5I0X7 151 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 FAM78BQ5VT40 261 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 C1orf158Q8N1D5 194 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 ABHD1Q96SE0 405 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 RPRMQ9NS64 109 aa11.91□□□□□ -0.5
VPS29-204ENST00000548259 LRP1BQ9NZR2 4599 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 UCP1P25874 307 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 MEOX2P50222 304 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 SP6Q3SY56 376 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 AARDQ4LEZ3 155 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 ARRDC1Q8N5I2 433 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 PPP1R14BQ96C90 147 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 IGF2BP2-AS1Q96M15 143 aa11.9□□□□□ -0.5
VPS29-204ENST00000548259 A0A0J9YX75 114 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 EPM2AB3EWF7 344 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 ATP5G1P05496 136 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 DEFB130BP0DP73 79 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 DEFB130AP0DP74 79 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 ATP5G3P48201 142 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 DEFB1P60022 68 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 SUPT4H1P63272 117 aaKnown RBP11.89□□□□□ -0.51
VPS29-204ENST00000548259 OR4C16Q8NGL9 310 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 WDR12Q9GZL7 423 aaKnown RBP11.89□□□□□ -0.51
VPS29-204ENST00000548259 DOK5Q9P104 306 aa11.89□□□□□ -0.51
VPS29-204ENST00000548259 NACAE9PAV3 2078 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 ZFP92A6NM28 416 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 APOA1P02647 267 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 TBPP20226 339 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 KLF9Q13886 244 aaPredicted RBP11.88□□□□□ -0.51
VPS29-204ENST00000548259 NEDD8Q15843 81 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 OR8I2Q8N0Y5 310 aa11.88□□□□□ -0.51
VPS29-204ENST00000548259 DMBT1Q9UGM3 2413 aaPredicted RBP11.88□□□□□ -0.51
VPS29-204ENST00000548259 A0A0G2JRQ6 117 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 TNFAIP8O95379 198 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 INSP01308 110 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 RPS19P39019 145 aaKnown RBP11.87□□□□□ -0.51
VPS29-204ENST00000548259 LHFPL1Q86WI0 220 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 C16orf92Q96LL3 132 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 PTTG2Q9NZH5 202 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 COMMD3Q9UBI1 195 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 CACNG5Q9UF02 275 aa11.87□□□□□ -0.51
VPS29-204ENST00000548259 SNRPGP15A8MWD9 76 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 GABARAPH6UMI1 98 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 DUSP14O95147 198 aaKnown RBP11.86□□□□□ -0.51
VPS29-204ENST00000548259 GABARAPO95166 117 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 CDS2O95674 445 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 TSPOP30536 169 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 SSX7Q7RTT5 188 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 RBPMSQ93062 196 aaKnown RBP11.86□□□□□ -0.51
VPS29-204ENST00000548259 GPR146Q96CH1 333 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 TMEM222Q9H0R3 208 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 LINC00588Q9Y4M8 146 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 U3KQ87 197 aa11.86□□□□□ -0.51
VPS29-204ENST00000548259 HERC1Q15751 4861 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 TEX13DA0A0J9YY54 714 aaPredicted RBP11.85□□□□□ -0.51
VPS29-204ENST00000548259 CBY3A6NI87 242 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 F6UB75 175 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 SOCS3O14543 225 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 BTF3P20290 206 aaKnown RBP11.85□□□□□ -0.51
VPS29-204ENST00000548259 S100A7P31151 101 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 GALR1P47211 349 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 LYZP61626 148 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 GPR141Q7Z602 305 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 TERB2Q8NHR7 220 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 SLC35E1Q96K37 410 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 Q9H8V8 135 aa11.85□□□□□ -0.51
VPS29-204ENST00000548259 C14orf166Q9Y224 244 aaKnown RBP11.85□□□□□ -0.51
VPS29-204ENST00000548259 ZNF705GA8MUZ8 300 aaPredicted RBP11.84□□□□□ -0.51
VPS29-204ENST00000548259 NXPH3O95157 252 aa11.84□□□□□ -0.51
VPS29-204ENST00000548259 ATP5IP56385 69 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms