RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SMIM7Q9BQ49 75 aa10.57□□□□□ -0.72
PTCH1-215ENST00000547672 HSPB9Q9BQS6 159 aa10.57□□□□□ -0.72
PTCH1-215ENST00000547672 RPS10P5Q9NQ39 176 aa10.57□□□□□ -0.72
PTCH1-215ENST00000547672 MRPL36Q9P0J6 103 aaKnown RBP10.57□□□□□ -0.72
PTCH1-215ENST00000547672 OR2J3O76001 311 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 OR2C1O95371 312 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 FSHBP01225 129 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 IGKV1-17P01599 117 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 RAB9AP51151 201 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 TIGITQ495A1 244 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 C9orf152Q5JTZ5 239 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 FAM90A2PQ658T7 463 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 OR5AU1Q8NGC0 362 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 DOK5Q9P104 306 aa10.56□□□□□ -0.72
PTCH1-215ENST00000547672 TACC2O95359 2948 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 IGHV3-21A0A0B4J1V1 117 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 A0A0G2JLM5 398 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 C7orf77A4D0Y5 90 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 CXorf65A6NEN9 183 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 FAM74A7A6NL05 159 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 NDUFB8O95169 186 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 IER3P46695 156 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 UBE2G2P60604 165 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 LYZP61626 148 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 UBE2L3P68036 154 aaKnown RBP10.55□□□□□ -0.72
PTCH1-215ENST00000547672 RHOGP84095 191 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 LY6EQ16553 131 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 DEFB112Q30KQ8 113 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 SPATA31B1PQ5VZV4 182 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 PATE2Q6UY27 113 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 Q6YL49 198 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 CTDSP1Q9GZU7 261 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 PRDM13Q9H4Q3 707 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 TMEM242Q9NWH2 141 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 MRPL27Q9P0M9 148 aaKnown RBP10.55□□□□□ -0.72
PTCH1-215ENST00000547672 TMEM14CQ9P0S9 112 aa10.55□□□□□ -0.72
PTCH1-215ENST00000547672 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.55□□□□□ -0.72
PTCH1-215ENST00000547672 WI2-2373I1.2A0A1W2PRP0 233 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 TMEM89A2RUT3 159 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 BMPR1BO00238 502 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 MAST4O15021 2626 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 SCO1O75880 301 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 MT-ND4LP03901 98 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 AMY1AP04745 511 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 S100A9P06702 114 aaKnown RBP10.54□□□□□ -0.72
PTCH1-215ENST00000547672 RELQ04864 619 aaPredicted RBP10.54□□□□□ -0.72
PTCH1-215ENST00000547672 C15orf32Q32M92 178 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 FBLN7Q53RD9 439 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 AWAT1Q58HT5 328 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 ATRAIDQ6UW56 229 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 ZNF600Q6ZNG1 722 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 BPIFA4PQ86YQ2 179 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 RNF125Q96EQ8 232 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 FAM167A-AS1Q96KT0 104 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 SLC25A2Q9BXI2 301 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 SDF2L1Q9HCN8 221 aa10.54□□□□□ -0.72
PTCH1-215ENST00000547672 ABCA2Q9BZC7 2435 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 HNF1AP20823 631 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 C19orf35Q6ZS72 473 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 KRTAP1-3Q8IUG1 177 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 TMEM86BQ8N661 226 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 C15orf54Q8N8G6 183 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 MAPK1IP1LQ8NDC0 245 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 ZNF502Q8TBZ5 544 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 C11orf52Q96A22 123 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 PRSS22Q9GZN4 317 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 PARLQ9H300 379 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 LY96Q9Y6Y9 160 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 NAV3Q8IVL0 2385 aa10.53□□□□□ -0.72
PTCH1-215ENST00000547672 UTP20O75691 2785 aaKnown RBP10.52□□□□□ -0.73
PTCH1-215ENST00000547672 DNASE2O00115 360 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-215ENST00000547672 PPP1R2P9O14990 202 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 IL4P05112 153 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 NBEAP1P0C6P0 100 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 HIST1H1EP10412 219 aaKnown RBP10.52□□□□□ -0.73
PTCH1-215ENST00000547672 ZNF674Q2M3X9 581 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 C19orf54Q5BKX5 351 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 LYPD1Q8N2G4 141 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 ZNF491Q8N8L2 437 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 OR4F17Q8NGA8 305 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 SHANK2-AS3Q9BTD1 123 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 SLC25A39Q9BZJ4 359 aaPredicted RBP10.52□□□□□ -0.73
PTCH1-215ENST00000547672 NPFFR1Q9GZQ6 430 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 RABAC1Q9UI14 185 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 VPREB3Q9UKI3 123 aa10.52□□□□□ -0.73
PTCH1-215ENST00000547672 PRRC2AP48634 2157 aaKnown RBP10.52□□□□□ -0.73
PTCH1-215ENST00000547672 HELTA6NFD8 242 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 G3V318 75 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 EIF3GO75821 320 aaKnown RBP eCLIP10.51□□□□□ -0.73
PTCH1-215ENST00000547672 NDUFB4O95168 129 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 TRGV3P03979 118 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 CLEC3BP05452 202 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 CTSGP08311 255 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 ATP5G3P48201 142 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 HIST1H2BAQ96A08 127 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 ANAPC16Q96DE5 110 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 GPR82Q96P67 336 aa10.51□□□□□ -0.73
PTCH1-215ENST00000547672 YTHDF2Q9Y5A9 579 aaKnown RBP10.51□□□□□ -0.73
PTCH1-215ENST00000547672 NAV2Q8IVL1 2488 aa10.5□□□□□ -0.73
PTCH1-215ENST00000547672 OR2T8A6NH00 312 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms