RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 LSM10Q969L4 123 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 TMEM230Q96A57 120 aa10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 SRSF8Q9BRL6 282 aaKnown RBP10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 COMMD5Q9GZQ3 224 aa10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 MS4A6AQ9H2W1 248 aa10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 GPN1Q9HCN4 374 aaPredicted RBP10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 TMEM140Q9NV12 185 aa10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 SHPKQ9UHJ6 478 aa10.85□□□□□ -0.67
CLSTN3-216ENST00000545663 C15orf62A8K5M9 175 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 SPART-AS1P0CW21 52 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 SP6Q3SY56 376 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 TMEM41BQ5BJD5 291 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 TCF24Q7RTU0 167 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 OR4A16Q8NH70 328 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 SEC22AQ96IW7 307 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 ATG101Q9BSB4 218 aa10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 LRP1Q07954 4544 aaKnown RBP10.84□□□□□ -0.67
CLSTN3-216ENST00000545663 C9orf170A2RU37 121 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 UPK2O00526 184 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 IL5P05113 134 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 SPP1P10451 314 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 HLA-GP17693 338 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 G6PCP35575 357 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 SUPT4H1P63272 117 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 PPP1R1AQ13522 171 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 RGS21Q2M5E4 152 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 TMEM268Q5VZI3 342 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 NRARPQ7Z6K4 114 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 BSCL2Q96G97 398 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 MARVELD1Q9BSK0 173 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 KRTAP1-5Q9BYS1 174 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 PLA2G2DQ9UNK4 145 aa10.83□□□□□ -0.68
CLSTN3-216ENST00000545663 TRAV6A0A075B6T7 132 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 DNASE2O00115 360 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 DFFBO76075 338 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 PAFAH1B2P68402 229 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 HAMPP81172 84 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 DHRS2Q13268 280 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 SELENOHQ8IZQ5 122 aaKnown RBP10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 OR1L8Q8NGR8 309 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 VN1R17PQ8TDU5 208 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 PDCD10Q9BUL8 212 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 FLVCR2Q9UPI3 526 aa10.82□□□□□ -0.68
CLSTN3-216ENST00000545663 INMT-MINDY4F8WBC2 141 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 NUPL2O15504 423 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 CYB5BO43169 146 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 IGKV1-39P01597 117 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 APOHP02749 345 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 IGKV1D-39P04432 117 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 SLC25A6P12236 298 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 ANXA7P20073 488 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 UBAC2Q8NBM4 344 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 MITD1Q8WV92 249 aa10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-216ENST00000545663 IGHV3-66A0A0C4DH42 116 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 A0A1B0GU03 582 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 IGLC7A0M8Q6 106 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 SNRPGP15A8MWD9 76 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 KRTAP29-1A8MX34 341 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 YIF1AO95070 293 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 KRTAP10-1P60331 282 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 ACTL10Q5JWF8 245 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 SPSB3Q6PJ21 355 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 Q6ZSN1 163 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 SLC35G3Q8N808 338 aa10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 ZNF431Q8TF32 576 aaPredicted RBP10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 QTRT1Q9BXR0 403 aaKnown RBP10.8□□□□□ -0.68
CLSTN3-216ENST00000545663 FAM229AH3BQW9 127 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 IGKV1-5P01602 117 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 CTSGP08311 255 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 P0C879 139 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 TRAPPC2P0DI81 140 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 TRAPPC2BP0DI82 140 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 SULT1A3P0DMM9 295 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 SULT1A4P0DMN0 295 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 BTF3P20290 206 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 OR2B8PP59922 312 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 HSPE1P61604 102 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 RPL11P62913 178 aaKnown RBP10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 FAM222AQ5U5X8 452 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 OR52E5Q8NH55 327 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 ST8SIA2Q92186 375 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 NIPSNAP3BQ9BS92 247 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 XCL2Q9UBD3 114 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 DKK2Q9UBU2 259 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 OR51B2Q9Y5P1 312 aa10.79□□□□□ -0.68
CLSTN3-216ENST00000545663 TRAV14DV4A0A0A6YYC5 116 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 SMCO1Q147U7 214 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 AARDQ4LEZ3 155 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 NMSQ5H8A3 153 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 OR10W1Q8NGF6 305 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 LHFPL5Q8TAF8 219 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 SCARB1Q8WTV0 552 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 OR10C1Q96KK4 312 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 C21orf62Q9NYP8 219 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 THYN1Q9P016 225 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 RABAC1Q9UI14 185 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 LINC00588Q9Y4M8 146 aa10.78□□□□□ -0.68
CLSTN3-216ENST00000545663 FAM90A26D6RGX4 464 aa10.77□□□□□ -0.69
CLSTN3-216ENST00000545663 SPCS3P61009 180 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms