RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C2orf16Q68DN1 1984 aa10.06□□□□□ -0.8
USP3-203ENST00000538686 OTOL1A6NHN0 477 aaPredicted RBP10.05□□□□□ -0.8
USP3-203ENST00000538686 KLK10O43240 276 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 LTAP01374 205 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 EVI2AP22794 236 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 ZNF542PQ5EBM4 170 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 KLF17Q5JT82 389 aaPredicted RBP10.05□□□□□ -0.8
USP3-203ENST00000538686 MOB3BQ86TA1 216 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 FGFBP3Q8TAT2 258 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 TMEM158Q8WZ71 300 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 PLPPR2Q96GM1 343 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 FMC1Q96HJ9 113 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 A0A1B0GUT8 65 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 ZMAT4Q9H898 229 aa10.05□□□□□ -0.8
USP3-203ENST00000538686 CSDC2Q9Y534 153 aaKnown RBP10.05□□□□□ -0.8
USP3-203ENST00000538686 NOTCH4Q99466 2003 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 TRAV25A0A0B4J276 109 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 TMEM30CPA0ZSE6 113 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 SMCPP49901 116 aaPredicted RBP10.04□□□□□ -0.8
USP3-203ENST00000538686 POU2AF1Q16633 256 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 FAM167A-AS1Q96KT0 104 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 ZNF488Q96MN9 340 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 OCIAD1Q9NX40 245 aa10.04□□□□□ -0.8
USP3-203ENST00000538686 OOEPA6NGQ2 149 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 H0Y8X5 98 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 IL4P05112 153 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 B4GALT1P15291 398 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 TNFRSF1AP19438 455 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 ACP1P24666 158 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 ZNF837Q96EG3 531 aaPredicted RBP10.03□□□□□ -0.8
USP3-203ENST00000538686 PAXXQ9BUH6 204 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 CFHR5Q9BXR6 569 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 FBXL15Q9H469 300 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 EPDR1Q9UM22 224 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 GON4LQ3T8J9 2241 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 J3QT63 122 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 PRRG2O14669 202 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 DNPH1O43598 174 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 OR2H2O95918 312 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 SP1P08047 785 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 PPIFP30405 207 aaKnown RBP10.03□□□□□ -0.8
USP3-203ENST00000538686 KIR2DS2P43631 304 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 LY6DQ14210 128 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 RTTNQ86VV8 2226 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 FADS6Q8N9I5 356 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 DNAJC30Q96LL9 226 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 FOXB1Q99853 325 aa10.03□□□□□ -0.8
USP3-203ENST00000538686 LINC00473A8K010 186 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 DLL1O00548 723 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 IFI27P40305 119 aaPredicted RBP10.02□□□□□ -0.81
USP3-203ENST00000538686 MEIG1Q5JSS6 88 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 ASPHD1Q5U4P2 390 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 PPP1R27Q86WC6 154 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 SBSPONQ8IVN8 264 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 OR1L4Q8NGR5 311 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 OR10J6PQ8NGY7 276 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 CARD19Q96LW7 228 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 ZNF714Q96N38 554 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 PPDPFQ9H3Y8 114 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 LRP4O75096 1905 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 C16orf97H3BN30 126 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 SCGB2A1O75556 95 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 NGFP01138 241 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 TMEM78Q5T7P6 136 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 C16orf47Q6ZP98 133 aaPredicted RBP10.02□□□□□ -0.81
USP3-203ENST00000538686 UBALD1Q8TB05 177 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 MDFICQ9P1T7 246 aa10.02□□□□□ -0.81
USP3-203ENST00000538686 TRBV20-1A0A075B6N2 111 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 TMEM213A2RRL7 107 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 C15orf61A6NNL5 157 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 A8MWV9 139 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 HOXA3O43365 443 aaPredicted RBP10.01□□□□□ -0.81
USP3-203ENST00000538686 IGKCP01834 107 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 CD27P26842 260 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 MYCNOSP40205 109 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 TMEM190Q8WZ59 177 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 HIST1H4GQ99525 98 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 C12orf49Q9H741 205 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 SPANXCQ9NY87 97 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 U3KQK5 164 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 MYO9BQ13459 2157 aa10.01□□□□□ -0.81
USP3-203ENST00000538686 C12orf77C9JDV5 145 aa10□□□□□ -0.81
USP3-203ENST00000538686 HSPE1P61604 102 aaKnown RBP10□□□□□ -0.81
USP3-203ENST00000538686 TWIST1Q15672 202 aa10□□□□□ -0.81
USP3-203ENST00000538686 FAM159AQ6UWV7 190 aa10□□□□□ -0.81
USP3-203ENST00000538686 ZNF493Q6ZR52 646 aa10□□□□□ -0.81
USP3-203ENST00000538686 RASL11BQ9BPW5 248 aa10□□□□□ -0.81
USP3-203ENST00000538686 HHLA3Q9XRX5 114 aa10□□□□□ -0.81
USP3-203ENST00000538686 FOXA2Q9Y261 457 aaPredicted RBP10□□□□□ -0.81
USP3-203ENST00000538686 IGKV2D-26A0A0A0MRZ7 120 aa10□□□□□ -0.81
USP3-203ENST00000538686 A0A1W2PPI3 338 aa10□□□□□ -0.81
USP3-203ENST00000538686 MOSP00540 346 aa10□□□□□ -0.81
USP3-203ENST00000538686 PATE4P0C8F1 98 aa10□□□□□ -0.81
USP3-203ENST00000538686 COL8A1P27658 744 aa10□□□□□ -0.81
USP3-203ENST00000538686 PRR31Q5SQ13 230 aa10□□□□□ -0.81
USP3-203ENST00000538686 PDPNQ86YL7 162 aa10□□□□□ -0.81
USP3-203ENST00000538686 FAM169BQ8N8A8 192 aa10□□□□□ -0.81
USP3-203ENST00000538686 SRSF8Q9BRL6 282 aaKnown RBP10□□□□□ -0.81
USP3-203ENST00000538686 DKK2Q9UBU2 259 aa10□□□□□ -0.81
USP3-203ENST00000538686 RP1P56715 2156 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms