RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TRGV9Q99603 122 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 SRD5A3Q9H8P0 318 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 U3KQK5 164 aa9.65□□□□□ -0.86
VPS28-216ENST00000533806 DNAH7Q8WXX0 4024 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 TRAV2A0A0B4J234 112 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 A0A1W2PS18 150 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 ZFP92A6NM28 416 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 INMT-MINDY4F8WBC2 141 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 PRAF2O60831 178 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 CCNKO75909 580 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 HNRNPCP07910 306 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS28-216ENST00000533806 BMI1P35226 326 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 DEFA1P59665 94 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 DEFA3P59666 94 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 C16orf54Q6UWD8 224 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 ACOT7LQ6ZUV0 252 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 STPG3Q8N7X2 389 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 OR51G1Q8NGK1 321 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 GLMPQ8WWB7 406 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 MS4A6AQ9H2W1 248 aa9.64□□□□□ -0.87
VPS28-216ENST00000533806 PAIP2BQ9ULR5 123 aaKnown RBP9.64□□□□□ -0.87
VPS28-216ENST00000533806 C5orf51A6NDU8 294 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 FAM25EA8MYX2 175 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 FNDC10F2Z333 226 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 K7EPK0 472 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 BUB3O43684 328 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 SCGB1D2O95969 90 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 P2RY1P47900 373 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 DLK1P80370 383 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 ARL16Q0P5N6 197 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 TMEM182Q6ZP80 229 aaPredicted RBP9.63□□□□□ -0.87
VPS28-216ENST00000533806 TMEM144Q7Z5S9 345 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 RNF125Q96EQ8 232 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 TMEM231Q9H6L2 316 aa9.63□□□□□ -0.87
VPS28-216ENST00000533806 GPN1Q9HCN4 374 aaPredicted RBP9.63□□□□□ -0.87
VPS28-216ENST00000533806 METTL15P1P0C7V9 234 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 OR8G2PQ6IF36 304 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 GSG1LQ6UXU4 331 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 GBGT1Q8N5D6 347 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 DCANP1Q8TF63 244 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 RCHY1Q96PM5 261 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 UBQLN2Q9UHD9 624 aa9.62□□□□□ -0.87
VPS28-216ENST00000533806 IGKV3-7A0A075B6H7 116 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 K7EQG2 157 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 DEDDO75618 318 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 FABP1P07148 127 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 TFPI2P48307 235 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 EIF2B2P49770 351 aaKnown RBP9.61□□□□□ -0.87
VPS28-216ENST00000533806 CMC4P56277 68 aaPredicted RBP9.61□□□□□ -0.87
VPS28-216ENST00000533806 PAFAH1B2P68402 229 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 FAM24BQ8N5W8 94 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 GGACTQ9BVM4 153 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 ZMAT4Q9H898 229 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 MAP6D1Q9H9H5 199 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 RABAC1Q9UI14 185 aa9.61□□□□□ -0.87
VPS28-216ENST00000533806 CFDP00746 253 aaPredicted RBP9.6□□□□□ -0.87
VPS28-216ENST00000533806 OR2F1Q13607 317 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 RAB32Q13637 225 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 OR10P1Q8NGE3 313 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 GRAMD2BQ96HH9 432 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 NARS2Q96I59 477 aaKnown RBP9.6□□□□□ -0.87
VPS28-216ENST00000533806 WWC2-AS2Q96NR7 200 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 SPATA25Q9BR10 227 aa9.6□□□□□ -0.87
VPS28-216ENST00000533806 LSM5Q9Y4Y9 91 aaKnown RBP9.6□□□□□ -0.87
VPS28-216ENST00000533806 LOC102724200A0A096LPH7 203 aaPredicted RBP9.59□□□□□ -0.87
VPS28-216ENST00000533806 HELTA6NFD8 242 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 SIX6O95475 246 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 GATA2P23769 480 aaPredicted RBP9.59□□□□□ -0.87
VPS28-216ENST00000533806 H2BFSP57053 126 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 ZNF124Q15973 351 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 C1orf194Q5T5A4 169 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 APRG1Q8IVJ8 170 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 PBDC1Q9BVG4 233 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 GGTLC1Q9BX51 225 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 NMES1Q9C002 83 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 NPVFQ9HCQ7 196 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 LYRM2Q9NU23 88 aaPredicted RBP9.59□□□□□ -0.87
VPS28-216ENST00000533806 SLC45A2Q9UMX9 530 aa9.59□□□□□ -0.87
VPS28-216ENST00000533806 FAM24AA6NFZ4 105 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 DNASE2O00115 360 aaPredicted RBP9.58□□□□□ -0.88
VPS28-216ENST00000533806 GOSR2O14653 212 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 PTTG1O95997 202 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 AP2S1P53680 142 aaPredicted RBP9.58□□□□□ -0.88
VPS28-216ENST00000533806 PLP1P60201 277 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 LYZP61626 148 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 RRAS2P62070 204 aaPredicted RBP9.58□□□□□ -0.88
VPS28-216ENST00000533806 RPL11P62913 178 aaKnown RBP9.58□□□□□ -0.88
VPS28-216ENST00000533806 AKR1C1Q04828 323 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 CYP2G1PQ6ZSU1 146 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 WFDC3Q8IUB2 231 aa9.58□□□□□ -0.88
VPS28-216ENST00000533806 KIR2DL5BA0A0G2JN68 375 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 KIR2DL5BA0A0G2JPC4 375 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 IGSF23A1L1A6 192 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 H0YIZ8 118 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 L7N2F9 121 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 NUP62P37198 522 aaPredicted RBP9.57□□□□□ -0.88
VPS28-216ENST00000533806 SELENOTP62341 195 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 VAMP2P63027 116 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 VWC2Q2TAL6 325 aa9.57□□□□□ -0.88
VPS28-216ENST00000533806 TEPPQ6URK8 271 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms