RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ODF3BA8MYP8 253 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TMEM238C9JI98 176 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 HCRTO43612 131 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 HAND1O96004 215 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 FABP1P07148 127 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 IL3P08700 152 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 LINC00614P0C842 121 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 CD36P16671 472 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 MIPP30301 263 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 GRPRP30550 384 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 GNG10P50151 68 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 PSMD7P51665 324 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 H2BFSP57053 126 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 ARPC4P59998 168 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 KRR1Q13601 381 aaKnown RBP1.31□□□□□ -2.2
CD44-233ENST00000531141 MAPK14Q16539 360 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TMEM97Q5BJF2 176 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TMEM42Q69YG0 159 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 RASSF6Q6ZTQ3 369 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 FAM19A3Q7Z5A8 133 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 SLC51BQ86UW2 128 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 OR5K1Q8NHB7 308 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 CCL4L1Q8NHW4 92 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TEX47Q8TBZ9 253 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 SLC37A2Q8TED4 501 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 FAM172AQ8WUF8 416 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 PATE1Q8WXA2 126 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 ASB17Q8WXJ9 295 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TMBIM1Q969X1 311 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TAMM41Q96BW9 452 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 BTF3L4Q96K17 158 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 CEP19Q96LK0 163 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 NIPSNAP1Q9BPW8 284 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 TIPINQ9BVW5 301 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 CHST5Q9GZS9 411 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 OR51E2Q9H255 320 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 OR51I2Q9H344 312 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 PARVAQ9NVD7 372 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 GLTPQ9NZD2 209 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 GLS2Q9UI32 602 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 FBXO5Q9UKT4 447 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 CCDC88CQ9P219 2028 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 FREM3P0C091 2139 aa1.31□□□□□ -2.2
CD44-233ENST00000531141 SRRM2Q9UQ35 2752 aaKnown RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 FRAS1Q86XX4 4008 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 MALRD1Q5VYJ5 2156 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 A0A1B0GV50 99 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 CLDN24A6NM45 220 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 C2orf74A8MZ97 194 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 M0QYV0 167 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 COPEO14579 308 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 NOS1APO75052 506 aaPredicted RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 KLF7O75840 302 aaPredicted RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 CRYBA1P05813 215 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 CST2P09228 141 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR5G3P0C626 314 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 CCR7P32248 378 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 SRP14P37108 136 aaKnown RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 GABRA4P48169 554 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 RAB2AP61019 212 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 NAA20P61599 178 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 DAD1P61803 113 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 HIST1H3AP68431 136 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 SLC35A2P78381 396 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 RPL19P84098 196 aaKnown RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 H3F3AP84243 136 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 EMX1Q04741 257 aaPredicted RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 SMAGPQ0VAQ4 97 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 PPP1R1AQ13522 171 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 APOFQ13790 326 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 LRRC75BQ2VPJ9 315 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 C1orf195Q5TG92 126 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 DHRS4L2Q6PKH6 230 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 HIST2H3AQ71DI3 136 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 SLC36A1Q7Z2H8 476 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 SMIM15Q7Z3B0 74 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 TAC4Q86UU9 113 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 COMMD7Q86VX2 200 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 C1orf158Q8N1D5 194 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 NATD1Q8N6N6 113 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 CLDN22Q8N7P3 220 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 TMEM161BQ8NDZ6 487 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR51D1Q8NGF3 324 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR4C16Q8NGL9 310 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR51H1Q8NH63 302 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR10D3Q8NH80 312 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 WFDC5Q8TCV5 224 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 CD200R1Q8TD46 325 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 DYDC1Q8WWB3 177 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 PYDC1Q8WXC3 89 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 SLC35G5Q96KT7 338 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 DNAJC30Q96LL9 226 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 OR52E6Q96RD3 313 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 TXNDC17Q9BRA2 123 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 MROQ9BYG7 248 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 EIF5A2Q9GZV4 153 aaKnown RBP1.3□□□□□ -2.2
CD44-233ENST00000531141 HES4Q9HCC6 221 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 TMEM216Q9P0N5 145 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 DKKL1Q9UK85 242 aa1.3□□□□□ -2.2
CD44-233ENST00000531141 HECTD4Q9Y4D8 3996 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms