RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 RNF212Q495C1 297 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 SMUG1Q53HV7 270 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 TMEM116Q8NCL8 245 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 OR51G1Q8NGK1 321 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 ARPC1AQ92747 370 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 ZNF48Q96MX3 618 aaPredicted RBP14.87□□□□□ -0.03
VPS28-207ENST00000526977 WNT10AQ9GZT5 417 aa14.87□□□□□ -0.03
VPS28-207ENST00000526977 TECRQ9NZ01 308 aaKnown RBP14.87□□□□□ -0.03
VPS28-207ENST00000526977 TLN2Q9Y4G6 2542 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 IGHV3-21A0A0B4J1V1 117 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 IGHV7-81A0A0B4J1V7 117 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 SELENOTP62341 195 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 KIAA0141Q14154 515 aaPredicted RBP14.86□□□□□ -0.03
VPS28-207ENST00000526977 ZNF503Q96F45 646 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 TXNDC17Q9BRA2 123 aa14.86□□□□□ -0.03
VPS28-207ENST00000526977 YTHDF2Q9Y5A9 579 aaKnown RBP14.86□□□□□ -0.03
VPS28-207ENST00000526977 CTRB1P17538 263 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 CTRB2Q6GPI1 263 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 TNFRSF19Q9NS68 423 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 LY6G6DO95868 133 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 PATE2Q6UY27 113 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 SMR3AQ99954 134 aa14.85□□□□□ -0.03
VPS28-207ENST00000526977 I3L2K1 104 aa14.84□□□□□ -0.03
VPS28-207ENST00000526977 AMY1AP04745 511 aa14.84□□□□□ -0.03
VPS28-207ENST00000526977 RAB5AP20339 215 aa14.84□□□□□ -0.03
VPS28-207ENST00000526977 TRGV9Q99603 122 aa14.84□□□□□ -0.03
VPS28-207ENST00000526977 FAM103A1Q9BTL3 118 aaKnown RBP14.84□□□□□ -0.03
VPS28-207ENST00000526977 VPREB3Q9UKI3 123 aa14.84□□□□□ -0.03
VPS28-207ENST00000526977 F6UZH7 168 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 NDUFB4O95168 129 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 C8orf88P0DMB2 117 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 RPL23P62829 140 aaKnown RBP14.83□□□□□ -0.03
VPS28-207ENST00000526977 MORN5Q5VZ52 161 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 OR4X1Q8NH49 305 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 RNF2Q99496 336 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 MRPL32Q9BYC8 188 aaKnown RBP14.83□□□□□ -0.03
VPS28-207ENST00000526977 DOK5Q9P104 306 aa14.83□□□□□ -0.03
VPS28-207ENST00000526977 TRAV5A0A0B4J249 113 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 CXorf65A6NEN9 183 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 TAS2R45P59539 299 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 PQLC2Q6ZP29 291 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 OR1L4Q8NGR5 311 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 FAM167A-AS1Q96KT0 104 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 HSPB9Q9BQS6 159 aa14.83□□□□□ -0.04
VPS28-207ENST00000526977 HOXA3O43365 443 aaPredicted RBP14.82□□□□□ -0.04
VPS28-207ENST00000526977 COX7A2P2O60397 106 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 ADIRFQ15847 76 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 C10orf113Q5VZT2 155 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 ZFP82Q8N141 532 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 SGMS2Q8NHU3 365 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 TMEM68Q96MH6 324 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 PFDN5Q99471 154 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 TMEM167BQ9NRX6 74 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 TMEM242Q9NWH2 141 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 ZFHX3Q15911 3703 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 OR7C2O60412 319 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 NDPQ00604 133 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 ELOBQ15370 118 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 ZNF343Q6P1L6 599 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 TMEM86BQ8N661 226 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 SIGLECL1Q8N7X8 197 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 SLC25A2Q9BXI2 301 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 GSX1Q9H4S2 264 aaPredicted RBP14.82□□□□□ -0.04
VPS28-207ENST00000526977 CDC42EP3Q9UKI2 254 aa14.82□□□□□ -0.04
VPS28-207ENST00000526977 EGR2P11161 476 aaPredicted RBP14.81□□□□□ -0.04
VPS28-207ENST00000526977 ASPHD1Q5U4P2 390 aa14.81□□□□□ -0.04
VPS28-207ENST00000526977 OR1L6Q8NGR2 347 aa14.81□□□□□ -0.04
VPS28-207ENST00000526977 DERL1Q9BUN8 251 aa14.81□□□□□ -0.04
VPS28-207ENST00000526977 MXRA5Q9NR99 2828 aa14.81□□□□□ -0.04
VPS28-207ENST00000526977 TTC9CQ8N5M4 171 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 SCO2A0A1W2PP80 73 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 NPIPB5A8MRT5 1133 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 K7EIM0 57 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 OR10J4P0C629 311 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 C2CD4CQ8TF44 421 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 Q8WTZ3 238 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 UHRF2Q96PU4 802 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 URGCP-MRPS24S4R325 110 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 ARL2-SNX15V9GYD0 113 aa14.8□□□□□ -0.04
VPS28-207ENST00000526977 ELOA3CA0A087WX78 387 aaPredicted RBP14.79□□□□□ -0.04
VPS28-207ENST00000526977 C1orf196B1AJZ1 125 aa14.79□□□□□ -0.04
VPS28-207ENST00000526977 TSPAN9O75954 239 aa14.79□□□□□ -0.04
VPS28-207ENST00000526977 IGHG2P01859 326 aa14.79□□□□□ -0.04
VPS28-207ENST00000526977 CTDSP1Q9GZU7 261 aa14.79□□□□□ -0.04
VPS28-207ENST00000526977 ZNF355PQ9NSJ1 428 aa14.79□□□□□ -0.04
VPS28-207ENST00000526977 SH2D7A6NKC9 451 aaPredicted RBP14.78□□□□□ -0.04
VPS28-207ENST00000526977 CLDN34H7C241 214 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 ATP6V0E1O15342 81 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 IGLC1P0CG04 106 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 SRD5A1P18405 259 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 ORM2P19652 201 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 RAB5BP61020 215 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 BLCAPP62952 87 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 C9orf152Q5JTZ5 239 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 OR5AU1Q8NGC0 362 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 SONP18583 2426 aaKnown RBP14.78□□□□□ -0.04
VPS28-207ENST00000526977 CXCL1P09341 107 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 CRIP2P52943 208 aaPredicted RBP14.78□□□□□ -0.04
VPS28-207ENST00000526977 LINC00305Q7Z4B0 112 aa14.78□□□□□ -0.04
VPS28-207ENST00000526977 SAV1Q9H4B6 383 aaPredicted RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms