RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 UBE2NLQ5JXB2 153 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 HES3Q5TGS1 186 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 C22orf39Q6P5X5 142 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 SCGB1D4Q6XE38 83 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 LINC00305Q7Z4B0 112 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 MARCH3Q86UD3 253 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 MKXQ8IYA7 352 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 C1orf174Q8IYL3 243 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 OR2T35Q8NGX2 323 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 VSTM2AQ8TAG5 236 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 ZNF721Q8TF20 911 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 C2orf15Q8WU43 125 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 C15orf40Q8WUR7 153 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 CHCHD10Q8WYQ3 142 aaPredicted RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 TMEM158Q8WZ71 300 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 PGLYRP4Q96LB8 373 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 PRELID3AQ96N28 172 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 DSCR8Q96T75 97 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 ST20Q9HBF5 79 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 BCL2L10Q9HD36 194 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 TAAR3PQ9P1P4 343 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 HHLA3Q9XRX5 114 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 SPCS1Q9Y6A9 102 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 V9GYH0 126 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 MYH2Q9UKX2 1941 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 RPRD2Q5VT52 1461 aaKnown RBP1.67□□□□□ -2.14
CD44-216ENST00000525293 REREQ9P2R6 1566 aa1.67□□□□□ -2.14
CD44-216ENST00000525293 DSPPQ9NZW4 1301 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 RGS12O14924 1447 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 CLASP1Q7Z460 1538 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 PREX2Q70Z35 1606 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 PTPRFP10586 1907 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 MAST4O15021 2626 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 IGKV1-27A0A075B6S5 117 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 IGHV1OR21-1A0A087WYE8 117 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 A0A0D9SEW6 157 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 MUC21A0A140T8X8 626 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 C3orf85A0A1B0GTC6 90 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 FAM220BPB1ANY3 271 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 C12orf77C9JDV5 145 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 INS-IGF2F8WCM5 200 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 H0Y9J4 135 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 H3BMG7 143 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 H3BUT2 72 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 K7ERJ3 54 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 GNGT2O14610 69 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 UQCRQO14949 82 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 CREBL2O60519 120 aaPredicted RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 NCR2O95944 276 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 TRACP01848 142 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 PYYP10082 97 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 CRYGAP11844 174 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 CRYGSP22914 178 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 PPIBP23284 216 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 CBLN1P23435 193 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 GADD45AP24522 165 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 SDC2P34741 201 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 RPL22P35268 128 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 DAPP51397 102 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 ZNF80P51504 273 aaPredicted RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 MP68P56378 58 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 GABARAPL2P60520 117 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 ELOBQ15370 118 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 ADIRFQ15847 76 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 C6orf99Q4VX62 202 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 MPV17L2Q567V2 206 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 Q56UQ5 140 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 MRPL2Q5T653 305 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 C1orf140Q5VVS0 124 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 AMTNQ6UX39 209 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 LINC00173Q6ZV60 143 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 KTN1-AS1Q86SY8 53 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 RNF182Q8N6D2 247 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 Q8N976 141 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 OR10J6PQ8NGY7 276 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 OR10AG1Q8NH19 301 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 FAM213BQ8TBF2 198 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 MAL2Q969L2 176 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 SHANK2-AS3Q9BTD1 123 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 DEFB127Q9H1M4 99 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 TXNL4BQ9NX01 149 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 NDUFB11Q9NX14 153 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 LSM2Q9Y333 95 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 NOP16Q9Y3C1 178 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 ZNF706Q9Y5V0 76 aaPredicted RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 IQSEC2Q5JU85 1478 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 BAZ2AQ9UIF9 1905 aaKnown RBP1.66□□□□□ -2.14
CD44-216ENST00000525293 FRMPD3Q5JV73 1810 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 SLIT3O75094 1523 aa1.66□□□□□ -2.14
CD44-216ENST00000525293 USP9XQ93008 2570 aaPredicted RBP1.65□□□□□ -2.14
CD44-216ENST00000525293 TDRD6O60522 2096 aaKnown RBP1.65□□□□□ -2.14
CD44-216ENST00000525293 CROCC2H7BZ55 1655 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 DIP2AQ14689 1571 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 NEO1Q92859 1461 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TRAV12-2A0A075B6T6 113 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 LOC389332A0A1B0GUA5 103 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 A0A1W2PPM0 123 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TLCD2A6NGC4 264 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 HMSDA8MTL9 139 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 A8MWL6 223 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms