RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 ABCC5O15440 1437 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 IQGAP3Q86VI3 1631 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 RAPGEF6Q8TEU7 1601 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 A0A0D9SEW6 157 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 ARRDC5A6NEK1 342 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 C17orf98A8MV24 154 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 MIF4GDA9UHW6 222 aaKnown RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 TP53I11O14683 189 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 SLC22A1O15245 554 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 NAPSAO96009 420 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 FABP2P12104 132 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 CCL5P13501 91 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 TMBIM6P55061 237 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 DNAJB13P59910 316 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 KISS1Q15726 138 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 SPINK14Q6IE38 97 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 C4orf22Q6V702 233 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 LRRC28Q86X40 367 aaPredicted RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 C1orf54Q8WWF1 131 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 ADAT1Q9BUB4 502 aaKnown RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 MRPL32Q9BYC8 188 aaKnown RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 TXNL4BQ9NX01 149 aaKnown RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 HEY1Q9Y5J3 304 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 ADGRL1O94910 1474 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 SCAF11Q99590 1463 aaKnown RBP3.38□□□□□ -1.87
USP47-204ENST00000525078 FAM135AQ9P2D6 1515 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 MAST2Q6P0Q8 1798 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 ADAMTS12P58397 1594 aa3.38□□□□□ -1.87
USP47-204ENST00000525078 CLTCL1P53675 1640 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 MYO3AQ8NEV4 1616 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 PLA2R1Q13018 1463 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 MAGI2Q86UL8 1455 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 SPHKAPQ2M3C7 1700 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 IGLV3-12A0A075B6K2 115 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 IGKV1-9A0A0C4DH69 117 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 A0A1B0GW64 132 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 CXCL1P09341 107 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 GZMBP10144 247 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 EVI2AP22794 236 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.37□□□□□ -1.87
USP47-204ENST00000525078 LHFPL1Q86WI0 220 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 CALML5Q9NZT1 146 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 DUOX2Q9NRD8 1548 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 KIAA0556O60303 1618 aa3.37□□□□□ -1.87
USP47-204ENST00000525078 FANCD2Q9BXW9 1451 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 ASXL1Q8IXJ9 1541 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 ECM29Q5VYK3 1845 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 IGHV3OR16-8A0A075B7F1 116 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 A0A096LPI6 279 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 IGHV3-15A0A0B4J1V0 119 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 TMEM235A6NFC5 223 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 GGTLC3B5MD39 225 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 H3BPC8 53 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 C19orf84I3L1E1 186 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 SMIM24O75264 130 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 IGKV1-16P04430 117 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 MSMBP08118 114 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 DYNLT3P51808 116 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 SIGLECL1Q8N7X8 197 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 OR51A4Q8NGJ6 313 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 ZC2HC1AQ96GY0 325 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 SCRT1Q9BWW7 348 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 TP53TG3Q9ULZ0 132 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 RNF11Q9Y3C5 154 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 TIMM9Q9Y5J7 89 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 TTC37Q6PGP7 1564 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 CFAP74Q9C0B2 1584 aa3.36□□□□□ -1.87
USP47-204ENST00000525078 INO80Q9ULG1 1556 aaPredicted RBP3.36□□□□□ -1.87
USP47-204ENST00000525078 TARBP1Q13395 1621 aaKnown RBP3.36□□□□□ -1.87
USP47-204ENST00000525078 KDM5AP29375 1690 aaKnown RBP3.36□□□□□ -1.87
USP47-204ENST00000525078 COL18A1P39060 1754 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 XIRP1Q702N8 1843 aaKnown RBP3.35□□□□□ -1.87
USP47-204ENST00000525078 CACNA1SQ13698 1873 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 ADGRB2O60241 1585 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 THADAQ6YHU6 1953 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 MADDQ8WXG6 1647 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 TRGV10A0A0A0MS01 117 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 J3QQQ9 107 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 J3QR89 54 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 HTR1AP08908 422 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 PAEPP09466 180 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 CD24P25063 80 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 RPL28P46779 137 aaKnown RBP3.35□□□□□ -1.87
USP47-204ENST00000525078 FOXA1P55317 472 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 ARPP19P56211 112 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 NEDD8Q15843 81 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 KHDC3LQ587J8 217 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 C22orf39Q6P5X5 142 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 DPPA3Q6W0C5 159 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 LINC00305Q7Z4B0 112 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 ZNF714Q96N38 554 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 C2orf88Q9BSF0 95 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 NPCDR1Q9BY65 106 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 SHPRHQ149N8 1683 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 PPRC1Q5VV67 1664 aaKnown RBP3.35□□□□□ -1.87
USP47-204ENST00000525078 TROQ12816 1431 aaPredicted RBP3.35□□□□□ -1.87
USP47-204ENST00000525078 IQSEC2Q5JU85 1478 aa3.35□□□□□ -1.87
USP47-204ENST00000525078 ABCA6Q8N139 1617 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 LOC107984640A0A0U1RRK4 108 aa3.34□□□□□ -1.87
USP47-204ENST00000525078 F8W036 122 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms