RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 IGKV1D-37A0A075B6S9 117 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 HELTA6NFD8 242 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 K7EQG2 157 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 ID3Q02535 119 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 ZNF90Q03938 601 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 PBDC1Q9BVG4 233 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 CSTL1Q9H114 145 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 TP53TG1Q9Y2A0 90 aa15.42■□□□□ 0.06
VPS28-203ENST00000524521 H3BP45 60 aa15.41■□□□□ 0.06
VPS28-203ENST00000524521 NKX2-1P43699 371 aaPredicted RBP15.41■□□□□ 0.06
VPS28-203ENST00000524521 AP2S1P53680 142 aaPredicted RBP15.41■□□□□ 0.06
VPS28-203ENST00000524521 POLR2GP62487 172 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS28-203ENST00000524521 IL17DQ8TAD2 202 aa15.41■□□□□ 0.06
VPS28-203ENST00000524521 GLMPQ8WWB7 406 aa15.41■□□□□ 0.06
VPS28-203ENST00000524521 RNF125Q96EQ8 232 aa15.41■□□□□ 0.06
VPS28-203ENST00000524521 C20orf85Q9H1P6 137 aa15.41■□□□□ 0.06
VPS28-203ENST00000524521 STRAPQ9Y3F4 350 aaKnown RBP15.41■□□□□ 0.06
VPS28-203ENST00000524521 TCRBP04435 133 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 FABP1P07148 127 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 OR2F1Q13607 317 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 OR4D5Q8NGN0 318 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 RNF183Q96D59 192 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 CCDC32Q9BV29 185 aa15.4■□□□□ 0.06
VPS28-203ENST00000524521 TRAV6A0A075B6T7 132 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 SNRPGP15A8MWD9 76 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 BUB3O43684 328 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 ZNF688P0C7X2 276 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 IAH1Q2TAA2 248 aaPredicted RBP15.39■□□□□ 0.05
VPS28-203ENST00000524521 LINC00299Q6ZSB3 139 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 DCANP1Q8TF63 244 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 MITD1Q8WV92 249 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 TRGV9Q99603 122 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 PSENENQ9NZ42 101 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 PFDN2Q9UHV9 154 aa15.39■□□□□ 0.05
VPS28-203ENST00000524521 PRSS46E5RG02 174 aa15.38■□□□□ 0.05
VPS28-203ENST00000524521 LYZP61626 148 aa15.38■□□□□ 0.05
VPS28-203ENST00000524521 S100ZQ8WXG8 99 aa15.38■□□□□ 0.05
VPS28-203ENST00000524521 GSKIPQ9P0R6 139 aa15.38■□□□□ 0.05
VPS28-203ENST00000524521 IGKV1OR2-108A0A075B7D4 117 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 A6NHS1 94 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 SSSCA1O60232 199 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 SCGB1D2O95969 90 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 OR8G2PQ6IF36 304 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 SIGLEC15Q6ZMC9 328 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 STHQ8IWL8 128 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 THAP8Q8NA92 274 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 DNAH7Q8WXX0 4024 aa15.37■□□□□ 0.05
VPS28-203ENST00000524521 KMT2CQ8NEZ4 4911 aaKnown RBP15.36■□□□□ 0.05
VPS28-203ENST00000524521 A0A0J9YWU9 116 aa15.36■□□□□ 0.05
VPS28-203ENST00000524521 ZBTB8BQ8NAP8 495 aaPredicted RBP15.36■□□□□ 0.05
VPS28-203ENST00000524521 SMIM8Q96KF7 97 aa15.36■□□□□ 0.05
VPS28-203ENST00000524521 NUDT15Q9NV35 164 aa15.36■□□□□ 0.05
VPS28-203ENST00000524521 NUP62P37198 522 aaPredicted RBP15.35■□□□□ 0.05
VPS28-203ENST00000524521 AKR1C1Q04828 323 aa15.35■□□□□ 0.05
VPS28-203ENST00000524521 PPP1R14BQ96C90 147 aa15.35■□□□□ 0.05
VPS28-203ENST00000524521 SEC22CQ9BRL7 303 aa15.35■□□□□ 0.05
VPS28-203ENST00000524521 NRN1Q9NPD7 142 aa15.35■□□□□ 0.05
VPS28-203ENST00000524521 BATF3Q9NR55 127 aa15.35■□□□□ 0.05
VPS28-203ENST00000524521 FAM240BA0A1B0GVZ2 78 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 KNCNA6PVL3 124 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 CA1P00915 261 aaPredicted RBP15.34■□□□□ 0.05
VPS28-203ENST00000524521 H2AFB2P0C5Z0 115 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 PAX9P55771 341 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 PSMG4Q5JS54 123 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 ACOT7LQ6ZUV0 252 aa15.34■□□□□ 0.05
VPS28-203ENST00000524521 SMCO3A2RU48 225 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 CCSO14618 274 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 CFDP00746 253 aaPredicted RBP15.33■□□□□ 0.04
VPS28-203ENST00000524521 SNRPD3P62318 126 aaKnown RBP15.33■□□□□ 0.04
VPS28-203ENST00000524521 MZT2BQ6NZ67 158 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 ZNF431Q8TF32 576 aaPredicted RBP15.33■□□□□ 0.04
VPS28-203ENST00000524521 GATAD1Q8WUU5 269 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 RAB40CQ96S21 281 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 RARRES2Q99969 163 aa15.33■□□□□ 0.04
VPS28-203ENST00000524521 FAM25EA8MYX2 175 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 GATA2P23769 480 aaPredicted RBP15.32■□□□□ 0.04
VPS28-203ENST00000524521 ZNF846Q147U1 533 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 ACTL10Q5JWF8 245 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 TMEM144Q7Z5S9 345 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 BPIFCQ8NFQ6 507 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 FBXL17Q9UF56 701 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 TBC1D24Q9ULP9 559 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 AGRNO00468 2067 aa15.32■□□□□ 0.04
VPS28-203ENST00000524521 PMS2P5A8MQ11 134 aa15.31■□□□□ 0.04
VPS28-203ENST00000524521 CCNKO75909 580 aa15.31■□□□□ 0.04
VPS28-203ENST00000524521 MBPP02686 304 aaPredicted RBP15.31■□□□□ 0.04
VPS28-203ENST00000524521 METTL15P1P0C7V9 234 aa15.31■□□□□ 0.04
VPS28-203ENST00000524521 C1orf194Q5T5A4 169 aa15.31■□□□□ 0.04
VPS28-203ENST00000524521 TRPT1Q86TN4 253 aaKnown RBP15.31■□□□□ 0.04
VPS28-203ENST00000524521 C12orf45Q8N5I9 185 aaPredicted RBP15.31■□□□□ 0.04
VPS28-203ENST00000524521 C5orf51A6NDU8 294 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 ORM2P19652 201 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 TAS2R30P59541 319 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 RRAS2P62070 204 aaPredicted RBP15.3■□□□□ 0.04
VPS28-203ENST00000524521 EWSR1Q01844 656 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS28-203ENST00000524521 ASAH1Q13510 395 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 TMEM14EPQ6UXP3 125 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 TMEM182Q6ZP80 229 aaPredicted RBP15.3■□□□□ 0.04
VPS28-203ENST00000524521 OR8I2Q8N0Y5 310 aa15.3■□□□□ 0.04
VPS28-203ENST00000524521 OR11H2Q8NH07 326 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms