RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 OR8G2PQ6IF36 304 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 MZT2BQ6NZ67 158 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 C16orf54Q6UWD8 224 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 STHQ8IWL8 128 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 TMEM217Q8N7C4 229 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 RNF125Q96EQ8 232 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 OVOL2Q9BRP0 275 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 PBDC1Q9BVG4 233 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 U3KQE9 123 aa12.07□□□□□ -0.48
LSM1-205ENST00000523511 ADAP1O75689 374 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 DEFB131AP59861 70 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 SNRPD3P62318 126 aaKnown RBP12.06□□□□□ -0.48
LSM1-205ENST00000523511 ZNF846Q147U1 533 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 MITD1Q8WV92 249 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 TRGV9Q99603 122 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 PSENENQ9NZ42 101 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 FBXL17Q9UF56 701 aa12.06□□□□□ -0.48
LSM1-205ENST00000523511 TCRBP04435 133 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 IAH1Q2TAA2 248 aaPredicted RBP12.05□□□□□ -0.48
LSM1-205ENST00000523511 TMEM41BQ5BJD5 291 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 ZFAND6Q6FIF0 208 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 S100A7AQ86SG5 101 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 GATAD1Q8WUU5 269 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 PPP1R14BQ96C90 147 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 RNF183Q96D59 192 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 C20orf85Q9H1P6 137 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 SEPSECSQ9HD40 501 aaKnown RBP12.05□□□□□ -0.48
LSM1-205ENST00000523511 TENM3Q9P273 2699 aa12.05□□□□□ -0.48
LSM1-205ENST00000523511 FAM240BA0A1B0GVZ2 78 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 K7EQG2 157 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 PLA2G10O15496 165 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 BUB3O43684 328 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 BTCP35070 178 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 POLR2GP62487 172 aaKnown RBP eCLIP12.04□□□□□ -0.48
LSM1-205ENST00000523511 USF2Q15853 346 aaPredicted RBP12.04□□□□□ -0.48
LSM1-205ENST00000523511 DEFB135Q30KP9 77 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 C1orf194Q5T5A4 169 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 SIGLEC15Q6ZMC9 328 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 SMIM8Q96KF7 97 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 RAB40CQ96S21 281 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 GSKIPQ9P0R6 139 aa12.04□□□□□ -0.48
LSM1-205ENST00000523511 TAS2R30P59541 319 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 ZNF90Q03938 601 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 AKR1C1Q04828 323 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 SAMD13Q5VXD3 122 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 BPIFCQ8NFQ6 507 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 OR4D5Q8NGN0 318 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 GLMPQ8WWB7 406 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 WDR12Q9GZL7 423 aaKnown RBP12.03□□□□□ -0.48
LSM1-205ENST00000523511 NRN1Q9NPD7 142 aa12.03□□□□□ -0.48
LSM1-205ENST00000523511 SSSCA1O60232 199 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 SCGB1D2O95969 90 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 H2AFB2P0C5Z0 115 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 ID1P41134 155 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 LYZP61626 148 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 NUTF2P61970 127 aaKnown RBP12.02□□□□□ -0.49
LSM1-205ENST00000523511 LEMD1Q68G75 181 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 MORN3Q6PF18 240 aaPredicted RBP12.02□□□□□ -0.49
LSM1-205ENST00000523511 THAP8Q8NA92 274 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 OR10P1Q8NGE3 313 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 DCANP1Q8TF63 244 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 SLC45A2Q9UMX9 530 aa12.02□□□□□ -0.49
LSM1-205ENST00000523511 TRAV6A0A075B6T7 132 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 H3BP45 60 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 L7N2F9 121 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 ZNF688P0C7X2 276 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 SPP1P10451 314 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 VAMP2P63027 116 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 OR2F1Q13607 317 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 TMEM144Q7Z5S9 345 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 OR8I2Q8N0Y5 310 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 ZBTB8BQ8NAP8 495 aaPredicted RBP12.01□□□□□ -0.49
LSM1-205ENST00000523511 ZNF431Q8TF32 576 aaPredicted RBP12.01□□□□□ -0.49
LSM1-205ENST00000523511 RARRES2Q99969 163 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 NUDT15Q9NV35 164 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 RNF24Q9Y225 148 aa12.01□□□□□ -0.49
LSM1-205ENST00000523511 HUWE1Q7Z6Z7 4374 aaKnown RBP12.01□□□□□ -0.49
LSM1-205ENST00000523511 IGKV1D-37A0A075B6S9 117 aa12□□□□□ -0.49
LSM1-205ENST00000523511 SMCO3A2RU48 225 aa12□□□□□ -0.49
LSM1-205ENST00000523511 C5orf51A6NDU8 294 aa12□□□□□ -0.49
LSM1-205ENST00000523511 FAM25EA8MYX2 175 aa12□□□□□ -0.49
LSM1-205ENST00000523511 TSC22D2O75157 780 aa12□□□□□ -0.49
LSM1-205ENST00000523511 CA1P00915 261 aaPredicted RBP12□□□□□ -0.49
LSM1-205ENST00000523511 ATF4P18848 351 aaPredicted RBP12□□□□□ -0.49
LSM1-205ENST00000523511 SELENOTP62341 195 aa12□□□□□ -0.49
LSM1-205ENST00000523511 ZNF124Q15973 351 aa12□□□□□ -0.49
LSM1-205ENST00000523511 NPVFQ9HCQ7 196 aa12□□□□□ -0.49
LSM1-205ENST00000523511 BATF3Q9NR55 127 aa12□□□□□ -0.49
LSM1-205ENST00000523511 MGAT4CQ9UBM8 478 aa12□□□□□ -0.49
LSM1-205ENST00000523511 A6NHS1 94 aa11.99□□□□□ -0.49
LSM1-205ENST00000523511 FNDC10F2Z333 226 aa11.99□□□□□ -0.49
LSM1-205ENST00000523511 IL5P05113 134 aa11.99□□□□□ -0.49
LSM1-205ENST00000523511 PVALBP20472 110 aaPredicted RBP11.99□□□□□ -0.49
LSM1-205ENST00000523511 PSMG4Q5JS54 123 aa11.99□□□□□ -0.49
LSM1-205ENST00000523511 C12orf45Q8N5I9 185 aaPredicted RBP11.99□□□□□ -0.49
LSM1-205ENST00000523511 TMEM147Q9BVK8 224 aa11.99□□□□□ -0.49
LSM1-205ENST00000523511 A0A0J9YWU9 116 aa11.98□□□□□ -0.49
LSM1-205ENST00000523511 PRSS46E5RG02 174 aa11.98□□□□□ -0.49
LSM1-205ENST00000523511 ORM2P19652 201 aa11.98□□□□□ -0.49
LSM1-205ENST00000523511 GALR1P47211 349 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms