RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ZNRF4Q8WWF5 429 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 MBD3L1Q8WWY6 194 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 LHX4Q969G2 390 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 TMEM54Q969K7 222 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 GNPNAT1Q96EK6 184 aaPredicted RBP4.42□□□□□ -1.7
NUP54-218ENST00000515460 DUX3Q96PT4 197 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 CST11Q9H112 138 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 MS4A6AQ9H2W1 248 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 CALHM2Q9HA72 323 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 SPANXB1Q9NS25 103 aaPredicted RBP4.42□□□□□ -1.7
NUP54-218ENST00000515460 RABAC1Q9UI14 185 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 POLDIP2Q9Y2S7 368 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 SPCS1Q9Y6A9 102 aa4.42□□□□□ -1.7
NUP54-218ENST00000515460 NCKAP5O14513 1909 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 ARID1AO14497 2285 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 ABCA1O95477 2261 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 MUC21A0A0G2JKD1 596 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 MUC21A0A140T8X8 626 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 A0A1W2PP11 408 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 A0A1W2PPM0 123 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 PRSS37A4D1T9 235 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 TMEM262E9PQX1 116 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 H0YJW9 148 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 PLPP1O14494 284 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 TIMM8AO60220 97 aaPredicted RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 GPR137BO60478 399 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 GAS8-AS1O95177 125 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 IGKV3-20P01619 116 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 GPX1P07203 203 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 OR9G9P0C7N8 305 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 COX7A2P14406 83 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 CRISP2P16562 243 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 ZNF17P17021 662 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 SRD5A1P18405 259 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 EDNRAP25101 427 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 CRYBB3P26998 211 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 HRH1P35367 487 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 PPP1CCP36873 323 aaKnown RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 PTGDSP41222 190 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 SSR2P43308 183 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 OR1E2P47887 323 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 DAP3P51398 398 aaKnown RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 ZNF133P52736 654 aaPredicted RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 PPP1R1AQ13522 171 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 C6orf226Q5I0X4 101 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 MUC21Q5SSG8 566 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 RPS27LQ71UM5 84 aaKnown RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 OSR2Q8N2R0 312 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 TMEM256Q8N2U0 113 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 GCSAMQ8N6F7 178 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 OR1L1Q8NH94 360 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 CLDND2Q8NHS1 167 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 FNDC9Q8TBE3 224 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 FAM213BQ8TBF2 198 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 C18orf32Q8TCD1 76 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 ZPLD1Q8TCW7 415 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 BORCS7Q96B45 105 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 FLYWCH2Q96CP2 140 aaKnown RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 SMIM19Q96E16 107 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 PERPQ96FX8 193 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 KCNS1Q96KK3 526 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 PGLYRP3Q96LB9 341 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 SPAG8Q99932 426 aaPredicted RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 HCAR1Q9BXC0 346 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 MRPL32Q9BYC8 188 aaKnown RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 COMMD5Q9GZQ3 224 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 CHST6Q9GZX3 395 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 OR2D2Q9H210 308 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 BEX4Q9NWD9 120 aaPredicted RBP4.41□□□□□ -1.7
NUP54-218ENST00000515460 ZNF257Q9Y2Q1 563 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 NSG2Q9Y328 171 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 LINC00312Q9Y6C7 94 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 V9GY05 133 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 V9GYY9 64 aa4.41□□□□□ -1.7
NUP54-218ENST00000515460 A0A0A6YYD5 115 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 FNDC10F2Z333 226 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 ISLRO14498 428 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 HSPB6O14558 160 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 GCM2O75603 506 aaPredicted RBP4.4□□□□□ -1.71
NUP54-218ENST00000515460 TTRP02766 147 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 MT-ND6P03923 174 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 CD3DP04234 171 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 CRYGDP07320 174 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 FAM106CPP0CH98 169 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 SLC25A6P12236 298 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 ORM2P19652 201 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 PRTN3P24158 256 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 NTSP30990 170 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 APOBEC1P41238 236 aaKnown RBP4.4□□□□□ -1.71
NUP54-218ENST00000515460 FABP6P51161 128 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 TNFAIP6P98066 277 aaPredicted RBP4.4□□□□□ -1.71
NUP54-218ENST00000515460 ACSM2AQ08AH3 577 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 FAM27E3Q08E93 113 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 IL15RAQ13261 267 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 FAM106AQ4KMX7 169 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 ZNF684Q5T5D7 378 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 ADAMTSL5Q6ZMM2 481 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 Q6ZUT4 128 aa4.4□□□□□ -1.71
NUP54-218ENST00000515460 BAGE3Q86Y29 109 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms