RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SLC25A6P12236 298 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PIPP12273 146 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ATP1B2P14415 290 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF17P17021 662 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ALOX5APP20292 161 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 HIST1H1TP22492 207 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ATP6V0CP27449 155 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OPRM1P35372 400 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SRP14P37108 136 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 NSG1P42857 185 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SULT1A2P50226 295 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GPM6AP51674 278 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RND2P52198 227 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 POLR2JP52435 117 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RBM11P57052 281 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TAS2R19P59542 299 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 KRTAP10-8P60410 259 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 KRTDAPP60985 99 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 UBE2NP61088 152 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RPS15AP62244 130 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GNB2P62879 340 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GRB2P62993 217 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TGFBR3Q03167 851 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF92Q03936 586 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 BCL2L1Q07817 233 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PPP1R1AQ13522 171 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 INSL4Q14641 139 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PSG5Q15238 335 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ADIRFQ15847 76 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C4orf26Q17RF5 130 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RPEL1Q2QD12 228 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ACOT6Q3I5F7 207 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GGTA1PQ4G0N0 100 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MPV17L2Q567V2 206 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MEIG1Q5JSS6 88 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GLYATL3Q5SZD4 288 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 BVES-AS1Q5T3Y7 98 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ZFAND6Q6FIF0 208 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GUSBP11Q6P575 273 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CBLN3Q6UW01 205 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 FAM159AQ6UWV7 190 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 FOXI2Q6ZQN5 318 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 Q6ZSR6 202 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RPS27LQ71UM5 84 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C9orf40Q8IXQ3 194 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A45Q8N413 288 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ZADH2Q8N4Q0 377 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TTC9CQ8N5M4 171 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 Q8N976 141 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ACOT4Q8N9L9 421 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ZNF439Q8NDP4 499 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 MDS2Q8NDY4 140 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR5A1Q8NGJ0 315 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR51A2Q8NGJ7 313 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR51G1Q8NGK1 321 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR6K6Q8NGW6 343 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR6K2Q8NGY2 324 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR2G3Q8NGZ4 309 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR10D3Q8NH80 312 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR10G6Q8NH81 332 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CMTM2Q8TAZ6 248 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A40Q8TBP6 338 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C15orf40Q8WUR7 153 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SMIM4Q8WVI0 70 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PP6455Q8WZ26 134 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR5P3Q8WZ94 311 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 STARD4Q96DR4 205 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 NUS1Q96E22 293 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TVP23CQ96ET8 276 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 C16orf74Q96GX8 76 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 COQ2Q96H96 371 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 TMEM101Q96IK0 257 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 VSIG2Q96IQ7 327 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 GPER1Q99527 375 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 HSD17B10Q99714 261 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 RARRES2Q99969 163 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 EBPLQ9BY08 206 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 DPY30Q9C005 99 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 WDR61Q9GZS3 305 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CHST6Q9GZX3 395 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 LINC00597Q9H2U6 94 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 OR51I1Q9H343 314 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 REEP1Q9H902 201 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 EDA2RQ9HAV5 297 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PATZ1Q9HBE1 687 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PARP11Q9NR21 331 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SPANXB1Q9NS25 103 aaPredicted RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 DCAF13Q9NV06 445 aaKnown RBP1.51□□□□□ -2.17
HMGB1-208ENST00000490788 SLC25A37Q9NYZ2 338 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 B9D1Q9UPM9 204 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 HIGD1AQ9Y241 93 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 CYSLTR1Q9Y271 337 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 HS3ST2Q9Y278 367 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 PKIGQ9Y2B9 76 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 DYSFO75923 2080 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 DOCK9Q9BZ29 2069 aa1.51□□□□□ -2.17
HMGB1-208ENST00000490788 ANK1P16157 1881 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TENM3Q9P273 2699 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TRBV20-1A0A075B6N2 111 aa1.5□□□□□ -2.17
HMGB1-208ENST00000490788 TRBV24-1A0A075B6N3 115 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms