RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 C16orf54Q6UWD8 224 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 GSG1LQ6UXU4 331 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 STPG3Q8N7X2 389 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 GLMPQ8WWB7 406 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 SLC35E1Q96K37 410 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 RABAC1Q9UI14 185 aa13.37□□□□□ -0.27
COL9A3-214ENST00000490398 A0A1W2PS18 150 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 ZFP92A6NM28 416 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 DNASE2O00115 360 aaPredicted RBP13.36□□□□□ -0.27
COL9A3-214ENST00000490398 CCNKO75909 580 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 BMI1P35226 326 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 DEFB131AP59861 70 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 PAFAH1B2P68402 229 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 IFITM3Q01628 133 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 OR2F1Q13607 317 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 LINC00299Q6ZSB3 139 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 STXBP6Q8NFX7 210 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 TMEM231Q9H6L2 316 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 NUDT15Q9NV35 164 aa13.36□□□□□ -0.27
COL9A3-214ENST00000490398 K7EQG2 157 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 SSSCA1O60232 199 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 IFNA21P01568 189 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 LYL1P12980 280 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 NKX2-1P43699 371 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-214ENST00000490398 IAH1Q2TAA2 248 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-214ENST00000490398 DEFB135Q30KP9 77 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 TMEM182Q6ZP80 229 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-214ENST00000490398 THAP8Q8NA92 274 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 ZBTB8BQ8NAP8 495 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-214ENST00000490398 DCANP1Q8TF63 244 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 RNF125Q96EQ8 232 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 CIB3Q96Q77 187 aaPredicted RBP13.35□□□□□ -0.27
COL9A3-214ENST00000490398 PBDC1Q9BVG4 233 aa13.35□□□□□ -0.27
COL9A3-214ENST00000490398 PMS2P5A8MQ11 134 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 BUB3O43684 328 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 SCGB1D2O95969 90 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 CD5P06127 495 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 PSENENQ9NZ42 101 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 TENM2Q9NT68 2774 aa13.34□□□□□ -0.27
COL9A3-214ENST00000490398 TRAV2A0A0B4J234 112 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 H2AFB2P0C5Z0 115 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 ZNF688P0C7X2 276 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 GATA2P23769 480 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-214ENST00000490398 APOC4P55056 127 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 EWSR1Q01844 656 aaKnown RBP eCLIP13.33□□□□□ -0.28
COL9A3-214ENST00000490398 ACOT7LQ6ZUV0 252 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 S100ZQ8WXG8 99 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 PTTG2Q9NZH5 202 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 GSKIPQ9P0R6 139 aa13.33□□□□□ -0.28
COL9A3-214ENST00000490398 RCL1Q9Y2P8 373 aaKnown RBP13.33□□□□□ -0.28
COL9A3-214ENST00000490398 STRAPQ9Y3F4 350 aaKnown RBP13.33□□□□□ -0.28
COL9A3-214ENST00000490398 KIR2DL5BA0A0G2JN68 375 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 KIR2DL5BA0A0G2JPC4 375 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 LYZP61626 148 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 KIR2DL5AQ8N109 375 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 KIR2DL5BQ8NHK3 375 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 ZNF431Q8TF32 576 aaPredicted RBP13.32□□□□□ -0.28
COL9A3-214ENST00000490398 GRAMD2BQ96HH9 432 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 NARS2Q96I59 477 aaKnown RBP13.32□□□□□ -0.28
COL9A3-214ENST00000490398 SMIM8Q96KF7 97 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 TRGV9Q99603 122 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 VPS13DQ5THJ4 4388 aa13.32□□□□□ -0.28
COL9A3-214ENST00000490398 FAM240BA0A1B0GVZ2 78 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 KNCNA6PVL3 124 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 SPRY2O43597 315 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 MBPP02686 304 aaPredicted RBP13.31□□□□□ -0.28
COL9A3-214ENST00000490398 EIF2B2P49770 351 aaKnown RBP13.31□□□□□ -0.28
COL9A3-214ENST00000490398 CMC4P56277 68 aaPredicted RBP13.31□□□□□ -0.28
COL9A3-214ENST00000490398 RPP30P78346 268 aaKnown RBP13.31□□□□□ -0.28
COL9A3-214ENST00000490398 ASAH1Q13510 395 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 OR8G2PQ6IF36 304 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 TMEM14EPQ6UXP3 125 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 Q6ZWC4 215 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 RNF183Q96D59 192 aa13.31□□□□□ -0.28
COL9A3-214ENST00000490398 HELTA6NFD8 242 aa13.3□□□□□ -0.28
COL9A3-214ENST00000490398 UPK1BO75841 260 aa13.3□□□□□ -0.28
COL9A3-214ENST00000490398 METTL15P1P0C7V9 234 aa13.3□□□□□ -0.28
COL9A3-214ENST00000490398 ARL16Q0P5N6 197 aa13.3□□□□□ -0.28
COL9A3-214ENST00000490398 CSTL1Q9H114 145 aa13.3□□□□□ -0.28
COL9A3-214ENST00000490398 FAM25EA8MYX2 175 aa13.29□□□□□ -0.28
COL9A3-214ENST00000490398 UBE2CO00762 179 aa13.29□□□□□ -0.28
COL9A3-214ENST00000490398 RRAS2P62070 204 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-214ENST00000490398 ZNF846Q147U1 533 aa13.29□□□□□ -0.28
COL9A3-214ENST00000490398 SIGLEC15Q6ZMC9 328 aa13.29□□□□□ -0.28
COL9A3-214ENST00000490398 C12orf45Q8N5I9 185 aaPredicted RBP13.29□□□□□ -0.28
COL9A3-214ENST00000490398 TP53TG1Q9Y2A0 90 aa13.29□□□□□ -0.28
COL9A3-214ENST00000490398 A0A0J9YWU9 116 aa13.28□□□□□ -0.28
COL9A3-214ENST00000490398 C7orf66A4D0T2 115 aa13.28□□□□□ -0.28
COL9A3-214ENST00000490398 SNRPGP15A8MWD9 76 aa13.28□□□□□ -0.28
COL9A3-214ENST00000490398 GIG44P09565 113 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-214ENST00000490398 DEFB1P60022 68 aa13.28□□□□□ -0.28
COL9A3-214ENST00000490398 AKR1C1Q04828 323 aa13.28□□□□□ -0.28
COL9A3-214ENST00000490398 WDR12Q9GZL7 423 aaKnown RBP13.28□□□□□ -0.28
COL9A3-214ENST00000490398 SMCO3A2RU48 225 aa13.27□□□□□ -0.29
COL9A3-214ENST00000490398 PSMG4Q5JS54 123 aa13.27□□□□□ -0.29
COL9A3-214ENST00000490398 MZT2BQ6NZ67 158 aa13.27□□□□□ -0.29
COL9A3-214ENST00000490398 TRPT1Q86TN4 253 aaKnown RBP13.27□□□□□ -0.29
COL9A3-214ENST00000490398 C17orf77Q96MU5 243 aa13.27□□□□□ -0.29
COL9A3-214ENST00000490398 C11orf1Q9H5F2 150 aa13.27□□□□□ -0.29
COL9A3-214ENST00000490398 NRN1Q9NPD7 142 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms