RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CLINT1Q14677 625 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 SPHARQ15513 63 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 OGFRL1Q5TC84 451 aaPredicted RBP3.58□□□□□ -1.84
PTPN4-209ENST00000469511 FAM78BQ5VT40 261 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 HACD4Q5VWC8 232 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM268Q5VZI3 342 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 THOC7Q6I9Y2 204 aaKnown RBP3.58□□□□□ -1.84
PTPN4-209ENST00000469511 AMTNQ6UX39 209 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM17Q86X19 198 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 ZNF555Q8NEP9 628 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 BPIFB6Q8NFQ5 453 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 LGALS14Q8TCE9 139 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM230Q96A57 120 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM56Q96MV1 263 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 LINC00052Q96N35 136 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 METTL26Q96S19 204 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 C7orf50Q9BRJ6 194 aaKnown RBP3.58□□□□□ -1.84
PTPN4-209ENST00000469511 C9orf16Q9BUW7 83 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 SAV1Q9H4B6 383 aaPredicted RBP3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM231Q9H6L2 316 aa3.58□□□□□ -1.84
PTPN4-209ENST00000469511 TRAV26-1A0A087WT03 109 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 TEX48A0A1B0GUV7 120 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 MEIS3P1A6NDR6 274 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 IFITM5A6NNB3 132 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 RHODO00212 210 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 SOCS3O14543 225 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 CLN5O75503 358 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 SNAPC5O75971 98 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 IFNA5P01569 189 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 FGF2P09038 288 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 P0C879 139 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 RNASE2P10153 161 aaKnown RBP3.57□□□□□ -1.84
PTPN4-209ENST00000469511 F2RP25116 425 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 NKX2-1P43699 371 aaPredicted RBP3.57□□□□□ -1.84
PTPN4-209ENST00000469511 NPBWR1P48145 328 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 ALDH3B2P48448 385 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 RORCP51449 518 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 PSG9Q00887 426 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 DHODHQ02127 395 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 CATR1Q13166 79 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 OR5I1Q13606 314 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 ZNF79Q15937 498 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 TTC32Q5I0X7 151 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 ZNF114Q8NC26 417 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 BEST4Q8NFU0 473 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 TMEM170AQ8WVE7 144 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 UPK3BQ9BT76 320 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 MAGT1Q9H0U3 335 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 NRN1Q9NPD7 142 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 PLCXD1Q9NUJ7 323 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 PTTG2Q9NZH5 202 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 COMMD9Q9P000 198 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 MRPS16Q9Y3D3 137 aaKnown RBP3.57□□□□□ -1.84
PTPN4-209ENST00000469511 GOLT1BQ9Y3E0 138 aa3.57□□□□□ -1.84
PTPN4-209ENST00000469511 TRAV12-2A0A075B6T6 113 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 CBY3A6NI87 242 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 LYRM9A8MSI8 78 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 PTGES3LE9PB15 166 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 M0R2Z0 102 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 BUB3O43684 328 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 ATP5G1P05496 136 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 IGLC1P0CG04 106 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 HSMCR30P0CW71 290 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 ATP5G3P48201 142 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 ERVK-16P61578 105 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 HSPE1P61604 102 aaKnown RBP3.56□□□□□ -1.84
PTPN4-209ENST00000469511 PRCDQ00LT1 54 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 MSMO1Q15800 293 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 SSX1Q16384 188 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 SPINK13Q1W4C9 94 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 PIK3CD-AS1Q5SR53 167 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 SIGLEC15Q6ZMC9 328 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 TPRA1Q86W33 373 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 BAP18Q8IXM2 172 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 CADM3Q8N126 398 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 NTN5Q8WTR8 489 aaPredicted RBP3.56□□□□□ -1.84
PTPN4-209ENST00000469511 GPR146Q96CH1 333 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 GNPNAT1Q96EK6 184 aaPredicted RBP3.56□□□□□ -1.84
PTPN4-209ENST00000469511 SEC22AQ96IW7 307 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 PRNDQ9UKY0 176 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 PKHD1L1Q86WI1 4243 aa3.56□□□□□ -1.84
PTPN4-209ENST00000469511 A0A096LPF7 62 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 A0A0A0MQY5 61 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 A0A0B4J293 547 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 A0A0J9YX75 114 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 METTL21EPA6NDL7 271 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 PGPEP1LA6NFU8 196 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 ZNF701M0R085 212 aaPredicted RBP3.55□□□□□ -1.84
PTPN4-209ENST00000469511 IL4P05112 153 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 ETV6P41212 452 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 RFX2P48378 723 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 PAX9P55771 341 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 GNG2P59768 71 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 ARPC4P59998 168 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 ERVFC1-1P60608 527 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 SNRPD3P62318 126 aaKnown RBP3.55□□□□□ -1.84
PTPN4-209ENST00000469511 PHLDA2Q53GA4 152 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 MZT2BQ6NZ67 158 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 FOXI2Q6ZQN5 318 aa3.55□□□□□ -1.84
PTPN4-209ENST00000469511 HOGA1Q86XE5 327 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms