RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PERPQ96FX8 193 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 GNB1LQ9BYB4 327 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 NAT8BQ9UHF3 227 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 F11RQ9Y624 299 aaKnown RBP7.13□□□□□ -1.27
SYNE1-217ENST00000466159 SMIM27A0A1W2PRY6 76 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 H3BTX0 84 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 TIMM23O14925 209 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 RBP4P02753 201 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 LIPFP07098 398 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 PAX1P15863 534 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 MYCNOSP40205 109 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 PLGLAQ15195 96 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 KIAA1644Q3SXP7 199 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 C22orf15Q8WYQ4 148 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 MS4A10Q96PG2 267 aa7.13□□□□□ -1.27
SYNE1-217ENST00000466159 ASH1LQ9NR48 2969 aaKnown RBP7.12□□□□□ -1.27
SYNE1-217ENST00000466159 PGPA6NDG6 321 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 HYPMO75409 117 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 SCGB1D1O95968 90 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 CD24P25063 80 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 RAB4BP61018 213 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 KLRB1Q12918 225 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 PRR27Q6MZM9 219 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 TMEM136Q6ZRR5 245 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 LY6G5BQ8NDX9 201 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 C2orf88Q9BSF0 95 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 RPH3ALQ9UNE2 315 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 HILPDAQ9Y5L2 63 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 SPTBN1Q01082 2364 aaKnown RBP7.12□□□□□ -1.27
SYNE1-217ENST00000466159 TRBV9A0A0B4J1U6 114 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 CORTO00230 105 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 SLC25A5P05141 298 aaKnown RBP7.12□□□□□ -1.27
SYNE1-217ENST00000466159 NBEAP1P0C6P0 100 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 KLRD1Q13241 179 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 SSX2Q16385 188 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 IQCJQ1A5X6 159 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 BAGE3Q86Y29 109 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 WNT10AQ9GZT5 417 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 RAB1BQ9H0U4 201 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 EPDR1Q9UM22 224 aa7.12□□□□□ -1.27
SYNE1-217ENST00000466159 SPTBN4Q9H254 2564 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 A0A1W2PRD5 423 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 A0A1W2PRF3 423 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 A0A1W2PRM7 423 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 A8MWP6 167 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 CNIH1O95406 144 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 PSG1P11464 419 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 MMDQ15546 238 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 TPTE2P1Q5T6R2 138 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 NUDT10Q8NFP7 164 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 STXBP6Q8NFX7 210 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 NUDT11Q96G61 164 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 GNB4Q9HAV0 340 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 I3L2K1 104 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 IGLC1P0CG04 106 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 GP9P14770 177 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 HTR1DP28221 377 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 LYZP61626 148 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 Q0VG73 95 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 TMEM183BQ1AE95 376 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 FBLN7Q53RD9 439 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 WDR73Q6P4I2 378 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 Q6ZWC4 215 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 NEU1Q99519 415 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 FAM103A1Q9BTL3 118 aaKnown RBP7.11□□□□□ -1.27
SYNE1-217ENST00000466159 MED13LQ71F56 2210 aa7.11□□□□□ -1.27
SYNE1-217ENST00000466159 WNK2Q9Y3S1 2297 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 IZUMO1RA6ND01 250 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 MT-ND6P03923 174 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 AMY1AP04745 511 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 ESDP10768 282 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 UCNP55089 124 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 TPPP2P59282 170 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 PLP1P60201 277 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 UBE2G1P62253 170 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 RPL19P84098 196 aaKnown RBP7.1□□□□□ -1.27
SYNE1-217ENST00000466159 MBD6Q96DN6 1003 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 CBLN4Q9NTU7 201 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 DPM3Q9P2X0 92 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 NAGKQ9UJ70 344 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 PAFAH1B2P68402 229 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 PAX2Q02962 417 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 LBHQ53QV2 105 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-217ENST00000466159 FAM231DQ6ZW35 169 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 TIMD4Q96H15 378 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 RNF5Q99942 180 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 C7orf69Q9H7B7 122 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 HIGD1AQ9Y241 93 aa7.1□□□□□ -1.27
SYNE1-217ENST00000466159 BMPR1BO00238 502 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 C11orf71Q6IPW1 123 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 NUP35Q8NFH5 326 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 OR11H6Q8NGC7 330 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 CFHR4Q92496 578 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 TMEM68Q96MH6 324 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 NOL4LQ96MY1 436 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-217ENST00000466159 RCHY1Q96PM5 261 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 RASL11BQ9BPW5 248 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 HSPB9Q9BQS6 159 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 Q9H3A6 140 aa7.09□□□□□ -1.27
SYNE1-217ENST00000466159 POLR3KQ9Y2Y1 108 aaPredicted RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms