RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 OR5AC1P0C628 307 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 SLC25A4P12235 298 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 TAS2R19P59542 299 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 SNRPD3P62318 126 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 USF2Q15853 346 aaPredicted RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 STEAP1BQ6NZ63 245 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 UBE2DNLQ8IWF7 75 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 SELENOHQ8IZQ5 122 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 LHFPL5Q8TAF8 219 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 RNASEH2CQ8TDP1 164 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 GLYATL2Q8WU03 294 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 TMEM170AQ8WVE7 144 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 AP3S1Q92572 193 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 NPIPB3Q92617 1050 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 RBPMSQ93062 196 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 GPR146Q96CH1 333 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 RTBDNQ9BSG5 229 aaPredicted RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 NDUFAF3Q9BU61 184 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 SCRT1Q9BWW7 348 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 C1QTNF4Q9BXJ3 329 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 NAA50Q9GZZ1 169 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 NRN1Q9NPD7 142 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 XCL2Q9UBD3 114 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 CACNG5Q9UF02 275 aa6.96□□□□□ -1.3
USP39-212ENST00000465514 C14orf166Q9Y224 244 aaKnown RBP6.96□□□□□ -1.3
USP39-212ENST00000465514 CEBPZOSA8MTT3 80 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 H3BMM0 161 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 BUB3O43684 328 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 NXPH3O95157 252 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 RD3LP0DJH9 198 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 ZNF182P17025 639 aaPredicted RBP6.95□□□□□ -1.3
USP39-212ENST00000465514 NUTF2P61970 127 aaKnown RBP6.95□□□□□ -1.3
USP39-212ENST00000465514 MEF2DQ14814 521 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 TMEM268Q5VZI3 342 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 FAAP20Q6NZ36 180 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 SIGLEC15Q6ZMC9 328 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 SLC24A4Q8NFF2 622 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 C15orf40Q8WUR7 153 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 ACY3Q96HD9 319 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 NAA60Q9H7X0 242 aa6.95□□□□□ -1.3
USP39-212ENST00000465514 SEPSECSQ9HD40 501 aaKnown RBP6.95□□□□□ -1.3
USP39-212ENST00000465514 FAT1Q14517 4588 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 GABARAPH6UMI1 98 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 GABARAPO95166 117 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 TOMM40O96008 361 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 IFNA21P01568 189 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 NPY1RP25929 384 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 CTF1Q16619 201 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 ETFRF1Q6IPR1 90 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 SPATA12Q7Z6I5 190 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 MIXL1Q9H2W2 232 aa6.94□□□□□ -1.3
USP39-212ENST00000465514 HMCN2Q8NDA2 5059 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 CRYM-AS1A6NIL9 109 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 DISC1C4P0D8 188 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 GSTZ1O43708 216 aaPredicted RBP6.93□□□□□ -1.3
USP39-212ENST00000465514 IGKV3-20P01619 116 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 PSG1P11464 419 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 HLA-DRB4P13762 266 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 NKX2-1P43699 371 aaPredicted RBP6.93□□□□□ -1.3
USP39-212ENST00000465514 DEFB1P60022 68 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 SSBP1Q04837 148 aaKnown RBP6.93□□□□□ -1.3
USP39-212ENST00000465514 SURF2Q15527 256 aaPredicted RBP6.93□□□□□ -1.3
USP39-212ENST00000465514 NMSQ5H8A3 153 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 GPR107Q5VW38 600 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 ZNF705AQ6ZN79 300 aaPredicted RBP6.93□□□□□ -1.3
USP39-212ENST00000465514 NOXA1Q86UR1 476 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 OR51G1Q8NGK1 321 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 PRR13Q9NZ81 148 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 GPR132Q9UNW8 380 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 TMEM56-RWDD3S4R434 201 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 HLA-DRB4X5D2U9 266 aa6.93□□□□□ -1.3
USP39-212ENST00000465514 ZNF705FA8MVS1 300 aaPredicted RBP6.92□□□□□ -1.3
USP39-212ENST00000465514 ZNF705DP0CH99 300 aaPredicted RBP6.92□□□□□ -1.3
USP39-212ENST00000465514 ZNF705BP0CI00 300 aaPredicted RBP6.92□□□□□ -1.3
USP39-212ENST00000465514 SPART-AS1P0CW21 52 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 SULT1A3P0DMM9 295 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 SULT1A4P0DMN0 295 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 EMP1P54849 157 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 FXYD7P58549 80 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 KLF9Q13886 244 aaPredicted RBP6.92□□□□□ -1.3
USP39-212ENST00000465514 GDF5OSQ5U4N7 250 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 Q5VSD8 79 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 OR4C16Q8NGL9 310 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 RNF125Q96EQ8 232 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 LINC00052Q96N35 136 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 NEU1Q99519 415 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 PBDC1Q9BVG4 233 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 CACFD1Q9UGQ2 172 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 U3KQ87 197 aa6.92□□□□□ -1.3
USP39-212ENST00000465514 IGHV3OR16-12A0A075B7B8 117 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 TMEM189A5PLL7 270 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 SMIM9A6NGZ8 99 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 CTDSP2O14595 271 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 RGS5O15539 181 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 AKAIN1P0CW23 69 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 NUP62P37198 522 aaPredicted RBP6.91□□□□□ -1.3
USP39-212ENST00000465514 MRPS10P82664 201 aaKnown RBP6.91□□□□□ -1.3
USP39-212ENST00000465514 LGI3Q8N145 548 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 OR51S1Q8NGJ8 323 aa6.91□□□□□ -1.3
USP39-212ENST00000465514 SMIM4Q8WVI0 70 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms