RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FAAP20Q6NZ36 180 aa16.16■□□□□ 0.18
USP4-208ENST00000464168 AP3S1Q92572 193 aa16.16■□□□□ 0.18
USP4-208ENST00000464168 C14orf166Q9Y224 244 aaKnown RBP16.16■□□□□ 0.18
USP4-208ENST00000464168 ZNF182P17025 639 aaPredicted RBP16.15■□□□□ 0.18
USP4-208ENST00000464168 EMP1P54849 157 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 DEFB1P60022 68 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 TMEM268Q5VZI3 342 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 OR51G1Q8NGK1 321 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 C15orf40Q8WUR7 153 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 MUC4Q99102 2169 aa16.15■□□□□ 0.18
USP4-208ENST00000464168 NAA50Q9GZZ1 169 aaKnown RBP16.15■□□□□ 0.18
USP4-208ENST00000464168 SMIM9A6NGZ8 99 aa16.14■□□□□ 0.17
USP4-208ENST00000464168 CTF1Q16619 201 aa16.14■□□□□ 0.17
USP4-208ENST00000464168 NMSQ5H8A3 153 aa16.14■□□□□ 0.17
USP4-208ENST00000464168 GPR107Q5VW38 600 aa16.14■□□□□ 0.17
USP4-208ENST00000464168 TMEM56-RWDD3S4R434 201 aa16.14■□□□□ 0.17
USP4-208ENST00000464168 TMEM189A5PLL7 270 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 CRYM-AS1A6NIL9 109 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 GABARAPH6UMI1 98 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 GABARAPO95166 117 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 IGKV3-20P01619 116 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 FXYD7P58549 80 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 SURF2Q15527 256 aaPredicted RBP16.13■□□□□ 0.17
USP4-208ENST00000464168 NOXA1Q86UR1 476 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 RNF125Q96EQ8 232 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 WDR12Q9GZL7 423 aaKnown RBP16.13■□□□□ 0.17
USP4-208ENST00000464168 GPR132Q9UNW8 380 aa16.13■□□□□ 0.17
USP4-208ENST00000464168 IGHV3OR16-12A0A075B7B8 117 aa16.12■□□□□ 0.17
USP4-208ENST00000464168 IFNA10P01566 189 aa16.12■□□□□ 0.17
USP4-208ENST00000464168 MIXL1Q9H2W2 232 aa16.12■□□□□ 0.17
USP4-208ENST00000464168 SAV1Q9H4B6 383 aaPredicted RBP16.12■□□□□ 0.17
USP4-208ENST00000464168 ABCA13Q86UQ4 5058 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 SULT1A3P0DMM9 295 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 SULT1A4P0DMN0 295 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 SSBP1Q04837 148 aaKnown RBP16.11■□□□□ 0.17
USP4-208ENST00000464168 Q6ZR54 194 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 ZNF709Q8N972 641 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 FAM210BQ96KR6 192 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 LINC00052Q96N35 136 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 CLUHP3Q96NS8 147 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 PLA2G2EQ9NZK7 142 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 DKK2Q9UBU2 259 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 CACFD1Q9UGQ2 172 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 RFNGQ9Y644 331 aa16.11■□□□□ 0.17
USP4-208ENST00000464168 IGLV2-18A0A075B6J9 118 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 IFNA21P01568 189 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 KLF9Q13886 244 aaPredicted RBP16.1■□□□□ 0.17
USP4-208ENST00000464168 OR8G2PQ6IF36 304 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 FOXI2Q6ZQN5 318 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 PBDC1Q9BVG4 233 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 U3KQ87 197 aa16.1■□□□□ 0.17
USP4-208ENST00000464168 DISC1C4P0D8 188 aa16.09■□□□□ 0.17
USP4-208ENST00000464168 NUP62P37198 522 aaPredicted RBP16.09■□□□□ 0.17
USP4-208ENST00000464168 FAM222AQ5U5X8 452 aa16.09■□□□□ 0.17
USP4-208ENST00000464168 NIPSNAP3BQ9BS92 247 aa16.09■□□□□ 0.17
USP4-208ENST00000464168 PRR13Q9NZ81 148 aa16.09■□□□□ 0.17
USP4-208ENST00000464168 IGKV1D-37A0A075B6S9 117 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 SOCS3O14543 225 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 ID1P41134 155 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 PSMB3P49720 205 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 MRPS10P82664 201 aaKnown RBP16.08■□□□□ 0.16
USP4-208ENST00000464168 ZNF90Q03938 601 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 GSG1LQ6UXU4 331 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 UBE2DNLQ8IWF7 75 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 LGI3Q8N145 548 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 OR4B1Q8NGF8 309 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 OR4C16Q8NGL9 310 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 IL22RA2Q969J5 263 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 SLC35B3Q9H1N7 401 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 HSPB7Q9UBY9 170 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 PFDN2Q9UHV9 154 aa16.08■□□□□ 0.16
USP4-208ENST00000464168 GAMTQ14353 236 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 ZNF79Q15937 498 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 C1orf194Q5T5A4 169 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 DTD1Q8TEA8 209 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 SMIM4Q8WVI0 70 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 RBKSQ9H477 322 aa16.07■□□□□ 0.16
USP4-208ENST00000464168 TEX48A0A1B0GUV7 120 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 ZFP92A6NM28 416 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 CTDSP2O14595 271 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 AKAIN1P0CW23 69 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 OXA1LQ15070 435 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 C1orf158Q8N1D5 194 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 OR51S1Q8NGJ8 323 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 KCNIP3Q9Y2W7 256 aa16.06■□□□□ 0.16
USP4-208ENST00000464168 F6UB75 175 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 GPX4P36969 197 aaPredicted RBP16.05■□□□□ 0.16
USP4-208ENST00000464168 CCR6P51684 374 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 SUPT4H1P63272 117 aaKnown RBP16.05■□□□□ 0.16
USP4-208ENST00000464168 PSG9Q00887 426 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 SMCO1Q147U7 214 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 RNF212Q495C1 297 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 SPATA31B1PQ5VZV4 182 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 LYZL2Q7Z4W2 148 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 COQ8AQ8NI60 647 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 PRRT1Q99946 306 aa16.05■□□□□ 0.16
USP4-208ENST00000464168 RGS5O15539 181 aa16.04■□□□□ 0.16
USP4-208ENST00000464168 HTN3P15516 51 aa16.04■□□□□ 0.16
USP4-208ENST00000464168 PAX9P55771 341 aa16.04■□□□□ 0.16
USP4-208ENST00000464168 LYZP61626 148 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms