RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGHV3-74A0A0B4J1X5 117 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TRAV2A0A0B4J234 112 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 ST8SIA3O43173 380 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 SCGB2A1O75556 95 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 DFFBO76075 338 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 GABARAPO95166 117 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TMEM50AO95807 157 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 IFNA17P01571 189 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 IGKV3-20P01619 116 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 CD74P04233 296 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 UCP1P25874 307 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TFPI2P48307 235 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TAS2R19P59542 299 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 ERVFC1-1P60608 527 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 CTF1Q16619 201 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TRIM16LQ309B1 348 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 SPINK9Q5DT21 86 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TCF24Q7RTU0 167 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 GBGT1Q8N5D6 347 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TMEM229BQ8NBD8 167 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 OR52I2Q8NH67 350 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TERB2Q8NHR7 220 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TMED6Q8WW62 240 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 RRNAD1Q96FB5 475 aaKnown RBP5.3□□□□□ -1.56
USP54-208ENST00000461520 ABHD1Q96SE0 405 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 RARRES2Q99969 163 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 MS4A6AQ9H2W1 248 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 TMEM231Q9H6L2 316 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 ENY2Q9NPA8 101 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 EXTL2Q9UBQ6 330 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 PUS1Q9Y606 427 aaKnown RBP eCLIP5.3□□□□□ -1.56
USP54-208ENST00000461520 KMT2AQ03164 3969 aa5.3□□□□□ -1.56
USP54-208ENST00000461520 A0A1B0GUV1 79 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 A0A1W2PS18 150 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 GABARAPH6UMI1 98 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 DNASE2O00115 360 aaPredicted RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 CLN5O75503 358 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 RAB3DO95716 219 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 APOHP02749 345 aaPredicted RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 RNASE2P10153 161 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 NPPCP23582 126 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 OPRK1P41145 380 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 RPL5P46777 297 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 HOXA1P49639 335 aaPredicted RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 PPP5CP53041 499 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 MRPS10P82664 201 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 SSBP1Q04837 148 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 BSXQ3C1V8 233 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 SP6Q3SY56 376 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 SCGB2B2Q4G0G5 96 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 AARDQ4LEZ3 155 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 GPR107Q5VW38 600 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 FAM219AQ8IW50 185 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 OR4D10Q8NGI6 311 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 OR4X1Q8NH49 305 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 OR52E5Q8NH55 327 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 PHLDA1Q8WV24 401 aaPredicted RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 MFFQ9GZY8 342 aa5.29□□□□□ -1.56
USP54-208ENST00000461520 NAA50Q9GZZ1 169 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 C11orf68Q9H3H3 251 aaKnown RBP5.29□□□□□ -1.56
USP54-208ENST00000461520 HECTD4Q9Y4D8 3996 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 TRAV30A0A087WSZ9 112 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 A0A0G2JRQ6 117 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 A0A1B0GU03 582 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 CDS2O95674 445 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 CA1P00915 261 aaPredicted RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 CRYBB3P26998 211 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 ETV6P41212 452 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 HTR2BP41595 481 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 DEFB131AP59861 70 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 SPCS3P61009 180 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 MEF2DQ14814 521 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 SURF2Q15527 256 aaPredicted RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 LCE1EQ5T753 118 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 STEAP1BQ6NZ63 245 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 STHQ8IWL8 128 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 NEXN-AS1Q8NBZ9 246 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 OR13C8Q8NGS7 320 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 OR11H2Q8NH07 326 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 RNASE11Q8TAA1 199 aaKnown RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 MARCH1Q8TCQ1 289 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 TMEM230Q96A57 120 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 GRAMD2BQ96HH9 432 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 NARS2Q96I59 477 aaKnown RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 METTL26Q96S19 204 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 TMEM222Q9H0R3 208 aa5.28□□□□□ -1.56
USP54-208ENST00000461520 FNDC4Q9H6D8 234 aaPredicted RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 C14orf166Q9Y224 244 aaKnown RBP5.28□□□□□ -1.56
USP54-208ENST00000461520 IGHV3-66A0A0C4DH42 116 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 TEX13DA0A0J9YY54 714 aaPredicted RBP5.27□□□□□ -1.57
USP54-208ENST00000461520 K7EQG2 157 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 RGS5O15539 181 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 OR5AC1P0C628 307 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 SMIM18P0DKX4 95 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 SLC25A4P12235 298 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 AMTP48728 403 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 DHODHQ02127 395 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 TMEM187Q14656 261 aa5.27□□□□□ -1.57
USP54-208ENST00000461520 C2orf83Q53S99 150 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms