RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ITLN1Q8WWA0 313 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 AP1S3Q96PC3 154 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 ZNF257Q9Y2Q1 563 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 F11RQ9Y624 299 aaKnown RBP9.45□□□□□ -0.9
CPSF3-202ENST00000460593 TPRP12270 2363 aaKnown RBP9.45□□□□□ -0.9
CPSF3-202ENST00000460593 UPK2O00526 184 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 APOHP02749 345 aaPredicted RBP9.45□□□□□ -0.9
CPSF3-202ENST00000460593 MOGAT3Q86VF5 341 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 EPDR1Q9UM22 224 aa9.45□□□□□ -0.9
CPSF3-202ENST00000460593 PAX2Q02962 417 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 MEF2CQ06413 473 aaPredicted RBP9.44□□□□□ -0.9
CPSF3-202ENST00000460593 PEAR1Q5VY43 1037 aaPredicted RBP9.44□□□□□ -0.9
CPSF3-202ENST00000460593 UFSP1Q6NVU6 142 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 GCSAMQ8N6F7 178 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 CEP250Q9BV73 2442 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 LIPFP07098 398 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 COX8AP10176 69 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 LPAL2Q16609 132 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 Q5PR19 223 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 ATP1A1-AS1Q5TC04 95 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 THYN1Q9P016 225 aa9.44□□□□□ -0.9
CPSF3-202ENST00000460593 G3V4G9 280 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 NTN3O00634 580 aaPredicted RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 OR5AL1P0C617 328 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 CECR9P0C854 216 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 CT45A6P0DMU7 189 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 CT45A5P0DMU8 189 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 CT45A7P0DMV0 189 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 RPS20P60866 119 aaKnown RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 KIR3DS1Q14943 382 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 RTL8BQ17RB0 113 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 C6orf15Q6UXA7 325 aaPredicted RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 PDPNQ86YL7 162 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 MAFAQ8NHW3 353 aaPredicted RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 CHCHD1Q96BP2 118 aaKnown RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 PERPQ96FX8 193 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 MGST3O14880 152 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 NBEAP1P0C6P0 100 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 PIP4P2Q8N4L2 257 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 RBMXL3Q8N7X1 1067 aaKnown RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 NEU4Q8WWR8 484 aaPredicted RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 PRNDQ9UKY0 176 aa9.43□□□□□ -0.9
CPSF3-202ENST00000460593 MRPS17Q9Y2R5 130 aaKnown RBP9.43□□□□□ -0.9
CPSF3-202ENST00000460593 SPRY3O43610 288 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 RPL24P83731 157 aaKnown RBP9.42□□□□□ -0.9
CPSF3-202ENST00000460593 PET117Q6UWS5 81 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 ZNF576Q9H609 170 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 hADV38S2A0JD32 116 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 F2RL2O00254 374 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 FAM87AP0C7U9 286 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 VWA1Q6PCB0 445 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 ATP5L2Q7Z4Y8 100 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 DAZAP1Q96EP5 407 aaKnown RBP9.42□□□□□ -0.9
CPSF3-202ENST00000460593 GPR82Q96P67 336 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 TTTY13Q9BZ97 58 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 IGKV1D-37A0A075B6S9 117 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 A0A0G2JLM5 398 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 A8MWL6 223 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 ARMS2P0C7Q2 107 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 KIR2DS2P43631 304 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 DIAPH2-AS1Q14236 149 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 C2orf83Q53S99 150 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 LINC01545Q5VT33 79 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 HCP5Q6MZN7 132 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 OR10AG1Q8NH19 301 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 GTSF1LQ9H1H1 148 aa9.42□□□□□ -0.9
CPSF3-202ENST00000460593 C9orf118A6NHY6 69 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 FSTL3O95633 263 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 FGF6P10767 208 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 NHLH1Q02575 133 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 WT1-ASQ06250 92 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 PCP2Q8IVA1 136 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 TMEM186Q96B77 213 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 MRPL32Q9BYC8 188 aaKnown RBP9.41□□□□□ -0.9
CPSF3-202ENST00000460593 TACC2O95359 2948 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 COL8A1P27658 744 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 CFHR2P36980 270 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 LGALS7P47929 136 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 PRNTQ86SH4 94 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 OR2K2Q8NGT1 345 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 ZNF747Q9BV97 191 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 C1RLQ9NZP8 487 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 PKDREJQ9NTG1 2253 aa9.41□□□□□ -0.9
CPSF3-202ENST00000460593 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.4□□□□□ -0.9
CPSF3-202ENST00000460593 A0A1W2PRD5 423 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 A0A1W2PRF3 423 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 A0A1W2PRM7 423 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 SRRM5B3KS81 715 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 SP9P0CG40 484 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 IFI27P40305 119 aaPredicted RBP9.4□□□□□ -0.9
CPSF3-202ENST00000460593 RBPMS2Q6ZRY4 209 aaKnown RBP9.4□□□□□ -0.9
CPSF3-202ENST00000460593 EXOC3-AS1Q8N2X6 119 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 FAM216BQ8N7L0 139 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 HARBI1Q96MB7 349 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 CLUHP3Q96NS8 147 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 HSPB8Q9UJY1 196 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 K7EP34 96 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 NMUP48645 174 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 GTF2H5Q6ZYL4 71 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 PRSS3P2Q8NHM4 247 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms