RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CACNG7P62955 275 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 SEC11AP67812 179 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 ATP5G2Q06055 141 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 Q0VG73 95 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 PNOCQ13519 176 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 DIAPH2-AS1Q14236 149 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 PAPPA-AS1Q5QFB9 102 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 GFI1BQ5VTD9 330 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 TMEM236Q5W0B7 351 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
VPS41-209ENST00000457055 TRAPPC6BQ86SZ2 158 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 RPS19BP1Q86WX3 136 aaKnown RBP4.23□□□□□ -1.73
VPS41-209ENST00000457055 ATOH7Q8N100 152 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 C3orf22Q8N5N4 141 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 NPWQ8N729 165 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 SMRP1Q8NCR6 262 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 OR10AC1Q8NH08 325 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 OR51H1Q8NH63 302 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 RPS4Y2Q8TD47 263 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 LMX1AQ8TE12 382 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 COPS9Q8WXC6 57 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 LINC00526Q96FQ7 95 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 DPH3Q96FX2 82 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 SPACA5Q96QH8 159 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 GPX7Q96SL4 187 aaPredicted RBP4.23□□□□□ -1.73
VPS41-209ENST00000457055 TBL1YQ9BQ87 522 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 EIF5A2Q9GZV4 153 aaKnown RBP4.23□□□□□ -1.73
VPS41-209ENST00000457055 AICDAQ9GZX7 198 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 CHCHD2Q9Y6H1 151 aaPredicted RBP4.23□□□□□ -1.73
VPS41-209ENST00000457055 NUP210LQ5VU65 1888 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 TCHHQ07283 1943 aa4.23□□□□□ -1.73
VPS41-209ENST00000457055 NUP210Q8TEM1 1887 aaPredicted RBP4.22□□□□□ -1.73
VPS41-209ENST00000457055 HECTD1Q9ULT8 2610 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 MCRIP1C9JLW8 97 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 TYROBPO43914 113 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 CGAP01215 116 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 HLA-DQB1P01920 261 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 CECR9P0C854 216 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 IGLC2P0DOY2 106 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 IGLC3P0DOY3 106 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 SDC2P34741 201 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 INPP1P49441 399 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 CST6Q15828 149 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 NSUN5P1Q3KNT7 163 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 ZNF718Q3SXZ3 478 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 FAM222AQ5U5X8 452 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 ZNF660Q6AZW8 331 aaPredicted RBP4.22□□□□□ -1.73
VPS41-209ENST00000457055 XAF1Q6GPH4 301 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 SLC25A34Q6PIV7 304 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 CLEC19AQ6UXS0 136 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 OR2T10Q8NGZ9 312 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 SCGB1C1Q8TD33 95 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 APOBEC4Q8WW27 367 aaKnown RBP4.22□□□□□ -1.73
VPS41-209ENST00000457055 KCNS1Q96KK3 526 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 PRSS27Q9BQR3 290 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 LIME1Q9H400 295 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 ST20Q9HBF5 79 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 OTORQ9NRC9 128 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 CACFD1Q9UGQ2 172 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 ARID2Q68CP9 1835 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 PATJQ8NI35 1801 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 LCTP09848 1927 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 C2orf16Q68DN1 1984 aa4.22□□□□□ -1.73
VPS41-209ENST00000457055 TRAV8-1A0A0A6YYK1 113 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 LOC100131303A0A0U1RQF7 123 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 C3orf85A0A1B0GTC6 90 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 PGPA6NDG6 321 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 UPK2O00526 184 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 HYPMO75409 117 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 SNCGO76070 127 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 PMS2P2O95744 297 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 IGHG1P01857 330 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 GYPAP02724 150 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 PYYP10082 97 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 VDAC2P45880 294 aaPredicted RBP4.21□□□□□ -1.74
VPS41-209ENST00000457055 NMUP48645 174 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 KLK7P49862 253 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 POLR2JP52435 117 aaKnown RBP4.21□□□□□ -1.74
VPS41-209ENST00000457055 CRISP3P54108 245 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 GFERP55789 205 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 RPS11P62280 158 aaKnown RBP eCLIP4.21□□□□□ -1.74
VPS41-209ENST00000457055 LPAL2Q16609 132 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 KIAA1644Q3SXP7 199 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 Q56UQ5 140 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 ZNF880Q6PDB4 577 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 Q6ZS92 163 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 AAED1Q7RTV5 226 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 MSRB3Q8IXL7 192 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 C10orf111Q8N326 155 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 SLC22A24Q8N4F4 322 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 MAPKAPK5-AS1Q8N8E1 139 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 ZNF709Q8N972 641 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 ZNF114Q8NC26 417 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 OR2T35Q8NGX2 323 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 OTOSQ8NHW6 89 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 VSTM2AQ8TAG5 236 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 BRK1Q8WUW1 75 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 LRRC29Q8WV35 223 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 NEURL3Q96EH8 262 aa4.21□□□□□ -1.74
VPS41-209ENST00000457055 S100A16Q96FQ6 103 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms