RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 OR10X1Q8NGY0 326 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 WFDC5Q8TCV5 224 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 ZNF418Q8TF45 676 aaPredicted RBP0.74□□□□□ -2.29
USP40-209ENST00000452724 YPEL2Q96QA6 119 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 KLK9Q9UKQ9 250 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 ARL5AQ9Y689 179 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 EXPH5Q8NEV8 1989 aa0.74□□□□□ -2.29
USP40-209ENST00000452724 TRGV10A0A0A0MS01 117 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 SERPINA1P01009 418 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 IFNA7P01567 189 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 MGST1P10620 155 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 CYBAP13498 195 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 SRP14P37108 136 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 PIGPP57054 158 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 CNBPP62633 177 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 RHOBP62745 196 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 ESRGQ1W209 222 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 RNASE10Q5GAN6 216 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 BRMS1LQ5PSV4 323 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 GOLT1AQ6ZVE7 132 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 C3orf56Q8N813 242 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 OR2T10Q8NGZ9 312 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 SLAMF6Q96DU3 332 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 LINC00467Q9BRT7 94 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 TMEM126AQ9H061 195 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 C14orf132Q9NPU4 83 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 ACER3Q9NUN7 267 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 RASL12Q9NYN1 266 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 OPTCQ9UBM4 332 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 UTP11Q9Y3A2 253 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 FAM32AQ9Y421 112 aaKnown RBP0.73□□□□□ -2.29
USP40-209ENST00000452724 ANAPC1Q9H1A4 1944 aa0.73□□□□□ -2.29
USP40-209ENST00000452724 HECW2Q9P2P5 1572 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 C1orf196B1AJZ1 125 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 INE1O15225 51 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 C1QBP02746 253 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 PRB4P10163 310 aaPredicted RBP0.72□□□□□ -2.29
USP40-209ENST00000452724 SRIP30626 198 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 RNASE4P34096 147 aaKnown RBP0.72□□□□□ -2.29
USP40-209ENST00000452724 ZNF93P35789 620 aaPredicted RBP0.72□□□□□ -2.29
USP40-209ENST00000452724 KRR1Q13601 381 aaKnown RBP0.72□□□□□ -2.29
USP40-209ENST00000452724 C1orf137Q5JT78 98 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 Q8N814 137 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 TEX37Q96LM6 180 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 OBSCN-AS1Q96MR7 158 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 PRADC1Q9BSG0 188 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 C9orf16Q9BUW7 83 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 BCL2L10Q9HD36 194 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 ENY2Q9NPA8 101 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 ARMC1Q9NVT9 282 aa0.72□□□□□ -2.29
USP40-209ENST00000452724 MED1Q15648 1581 aaPredicted RBP0.71□□□□□ -2.3
USP40-209ENST00000452724 TENM3Q9P273 2699 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 A8MWV9 139 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 DHFRP00374 187 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 ATP5G3P48201 142 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 C22orf39Q6P5X5 142 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 CANT1Q8WVQ1 401 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 PHB2Q99623 299 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 C6orf62Q9GZU0 229 aaPredicted RBP0.71□□□□□ -2.3
USP40-209ENST00000452724 PYCARDQ9ULZ3 195 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 ZFP30Q9Y2G7 519 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 COL4A5P29400 1685 aa0.71□□□□□ -2.3
USP40-209ENST00000452724 ADGRB2O60241 1585 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.7□□□□□ -2.3
USP40-209ENST00000452724 TRBV6-8A0A0A6YYG3 113 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 CLDN25C9JDP6 229 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 AIPO00170 330 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 DYNLT1P63172 113 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 DEFB113Q30KQ7 82 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 BCL2L15Q5TBC7 163 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 DHRS4L2Q6PKH6 230 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 LINC00301Q8NCQ3 95 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 SLC30A7Q8NEW0 376 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 PXT1Q8NFP0 134 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 STAG3L4Q8TBR4 150 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 DGCR14Q96DF8 476 aaKnown RBP0.7□□□□□ -2.3
USP40-209ENST00000452724 GPER1Q99527 375 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 PSTPIP2Q9H939 334 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 KIF13BQ9NQT8 1826 aa0.7□□□□□ -2.3
USP40-209ENST00000452724 TNRC6BQ9UPQ9 1833 aaKnown RBP0.69□□□□□ -2.3
USP40-209ENST00000452724 TRAV3A0A0B4J244 114 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 ZNF736B4DX44 427 aaPredicted RBP0.69□□□□□ -2.3
USP40-209ENST00000452724 M0R378 163 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 TAX1BP3O14907 124 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 GGCTO75223 188 aaKnown RBP0.69□□□□□ -2.3
USP40-209ENST00000452724 NDUFC2O95298 119 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 SERPINB9P50453 376 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 DEFA3P59666 94 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 MYL5Q02045 173 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 SCGB2B2Q4G0G5 96 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 GDF5OSQ5U4N7 250 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 SOSTDC1Q6X4U4 206 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 PDZD9Q8IXQ8 264 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 Q8IYB0 196 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 OR2T35Q8NGX2 323 aa0.69□□□□□ -2.3
USP40-209ENST00000452724 DUXBA0A1W2PPF3 345 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 HMGB3O15347 200 aaKnown RBP0.68□□□□□ -2.3
USP40-209ENST00000452724 NDUFB3O43676 98 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 GADD45GO95257 159 aa0.68□□□□□ -2.3
USP40-209ENST00000452724 MPV17LQ2QL34 196 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms