RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 FOXL1Q12952 345 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 ACOT6Q3I5F7 207 aaPredicted RBP14.87□□□□□ -0.03
RPS28-202ENST00000449223 TMEM41BQ5BJD5 291 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 FAM74A1Q5RGS3 127 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 AKR1C8PQ5T2L2 129 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 ZNF600Q6ZNG1 722 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 Q6ZRG5 221 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 OR51G1Q8NGK1 321 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 GNB4Q9HAV0 340 aa14.87□□□□□ -0.03
RPS28-202ENST00000449223 I3L521 148 aa14.86□□□□□ -0.03
RPS28-202ENST00000449223 ARL3P36405 182 aa14.86□□□□□ -0.03
RPS28-202ENST00000449223 RELQ04864 619 aaPredicted RBP14.86□□□□□ -0.03
RPS28-202ENST00000449223 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.86□□□□□ -0.03
RPS28-202ENST00000449223 C4orf3Q8WVX3 66 aa14.86□□□□□ -0.03
RPS28-202ENST00000449223 VSIRQ9H7M9 311 aa14.86□□□□□ -0.03
RPS28-202ENST00000449223 RPRMQ9NS64 109 aa14.86□□□□□ -0.03
RPS28-202ENST00000449223 PEF1Q9UBV8 284 aaKnown RBP14.86□□□□□ -0.03
RPS28-202ENST00000449223 WI2-2373I1.2A0A1W2PRP0 233 aa14.85□□□□□ -0.03
RPS28-202ENST00000449223 BMPR1BO00238 502 aa14.85□□□□□ -0.03
RPS28-202ENST00000449223 ELLP55199 621 aaPredicted RBP14.85□□□□□ -0.03
RPS28-202ENST00000449223 RPP25LQ8N5L8 163 aaKnown RBP14.85□□□□□ -0.03
RPS28-202ENST00000449223 Q8WTZ3 238 aa14.85□□□□□ -0.03
RPS28-202ENST00000449223 SAT2Q96F10 170 aaPredicted RBP14.85□□□□□ -0.03
RPS28-202ENST00000449223 ATRQ13535 2644 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 ELOA3CA0A087WX78 387 aaPredicted RBP14.84□□□□□ -0.03
RPS28-202ENST00000449223 SEC14L6B5MCN3 397 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 TRBV12-3P01733 135 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 RAB2AP61019 212 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 GATAD1Q8WUU5 269 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 PFDN5Q99471 154 aa14.84□□□□□ -0.03
RPS28-202ENST00000449223 PPP5D1E7EU14 171 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 GGCTO75223 188 aaKnown RBP14.83□□□□□ -0.04
RPS28-202ENST00000449223 GCSAMLQ5JQS6 135 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 OR10G4Q8NGN3 311 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 OR10G9Q8NGN4 311 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 OR10G7Q8NGN6 311 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 OR1L4Q8NGR5 311 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 TMEM37Q8WXS4 190 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 RNF125Q96EQ8 232 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 ZFAND3Q9H8U3 227 aa14.83□□□□□ -0.04
RPS28-202ENST00000449223 NMBP08949 121 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 OR5G3P0C626 314 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 CD28P10747 220 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 DNAJC4Q9NNZ3 241 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 MRPL27Q9P0M9 148 aaKnown RBP14.82□□□□□ -0.04
RPS28-202ENST00000449223 TSSC4Q9Y5U2 329 aaPredicted RBP14.82□□□□□ -0.04
RPS28-202ENST00000449223 PUS1Q9Y606 427 aaKnown RBP eCLIP14.82□□□□□ -0.04
RPS28-202ENST00000449223 NDUFA4O00483 81 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 IL4P05112 153 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 FHITP49789 147 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 PATE2Q6UY27 113 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 PRIMA1Q86XR5 153 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 RCC1LQ96I51 464 aaKnown RBP14.82□□□□□ -0.04
RPS28-202ENST00000449223 RNF2Q99496 336 aa14.82□□□□□ -0.04
RPS28-202ENST00000449223 ANKRD34BA5PLL1 514 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 ZNF705EA8MWA4 302 aaPredicted RBP14.81□□□□□ -0.04
RPS28-202ENST00000449223 HAX1O00165 279 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 HYPMO75409 117 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 BLOC1S1P78537 153 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 CLLU1Q5K131 121 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 TOMM20LQ6UXN7 152 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 GPHB5Q86YW7 130 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 LYPD6BQ8NI32 183 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 OR5B12Q96R08 314 aa14.81□□□□□ -0.04
RPS28-202ENST00000449223 MRPL32Q9BYC8 188 aaKnown RBP14.81□□□□□ -0.04
RPS28-202ENST00000449223 COX7A2P2O60397 106 aa14.8□□□□□ -0.04
RPS28-202ENST00000449223 HSPB1P04792 205 aaKnown RBP14.8□□□□□ -0.04
RPS28-202ENST00000449223 RHOBP62745 196 aa14.8□□□□□ -0.04
RPS28-202ENST00000449223 USF2Q15853 346 aaPredicted RBP14.8□□□□□ -0.04
RPS28-202ENST00000449223 ZNF726P1Q15940 193 aa14.8□□□□□ -0.04
RPS28-202ENST00000449223 FAM213BQ8TBF2 198 aa14.8□□□□□ -0.04
RPS28-202ENST00000449223 CITED2Q99967 270 aaPredicted RBP14.8□□□□□ -0.04
RPS28-202ENST00000449223 ACTR3CQ9C0K3 210 aaPredicted RBP14.8□□□□□ -0.04
RPS28-202ENST00000449223 SEPSECSQ9HD40 501 aaKnown RBP14.8□□□□□ -0.04
RPS28-202ENST00000449223 CTXND1A0A1B0GTU2 59 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 ORM2P19652 201 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 LYZP61626 148 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 C10orf113Q5VZT2 155 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 OR1B1Q8NGR6 318 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 MBD3L1Q8WWY6 194 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 FUT9Q9Y231 359 aa14.79□□□□□ -0.04
RPS28-202ENST00000449223 TRAV1-1A0A0B4J248 108 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 CDC34P49427 236 aaPredicted RBP14.78□□□□□ -0.04
RPS28-202ENST00000449223 KRTAP10-3P60369 221 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 RAB14P61106 215 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 KRTAP24-1Q3LI83 254 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 FAM78BQ5VT40 261 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 C18orf65Q6ZTR6 163 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 S100A7AQ86SG5 101 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 KLHL30-AS1Q8NEE0 82 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 TMEM190Q8WZ59 177 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 RAB24Q969Q5 203 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 HIGD1AQ9Y241 93 aa14.78□□□□□ -0.04
RPS28-202ENST00000449223 IGHV4OR15-8A0A075B7B6 117 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 A0A087WW49 117 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 A0A1W2PPV4 95 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 ZP3P21754 424 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 AWAT1Q58HT5 328 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 SSX7Q7RTT5 188 aa14.77□□□□□ -0.04
RPS28-202ENST00000449223 DOK5Q9P104 306 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms