RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 VSIRQ9H7M9 311 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 ZMAT4Q9H898 229 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 SRD5A3Q9H8P0 318 aa8.58□□□□□ -1.04
COL28A1-203ENST00000435823 IGHV3-66A0A0C4DH42 116 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 INMT-MINDY4F8WBC2 141 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 L7N2F9 121 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 TSC22D2O75157 780 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 CRYBB3P26998 211 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 TAS2R30P59541 319 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 RPL11P62913 178 aaKnown RBP8.57□□□□□ -1.04
COL28A1-203ENST00000435823 VAMP2P63027 116 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 C2orf50Q96LR7 162 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 WFDC10AQ9H1F0 79 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 U3KQK5 164 aa8.57□□□□□ -1.04
COL28A1-203ENST00000435823 IGKV3-7A0A075B6H7 116 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 SNRPGP15A8MWD9 76 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 PRSS46E5RG02 174 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 DFFBO76075 338 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 MBPP02686 304 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 APOHP02749 345 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 PSG1P11464 419 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 P2RY1P47900 373 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 TFPI2P48307 235 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 EIF2B2P49770 351 aaKnown RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 CMC4P56277 68 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 AKR1C1Q04828 323 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 FAM90A2PQ658T7 463 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 OR8G2PQ6IF36 304 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 ACOT7LQ6ZUV0 252 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 OR51G1Q8NGK1 321 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 RNF125Q96EQ8 232 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 TRGV9Q99603 122 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 PFDN2Q9UHV9 154 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 RABAC1Q9UI14 185 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 RCL1Q9Y2P8 373 aaKnown RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 LSM5Q9Y4Y9 91 aaKnown RBP8.56□□□□□ -1.04
COL28A1-203ENST00000435823 COL7A1Q02388 2944 aa8.56□□□□□ -1.04
COL28A1-203ENST00000435823 IGKV1D-37A0A075B6S9 117 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 SMCO3A2RU48 225 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 HELTA6NFD8 242 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 DNASE2O00115 360 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-203ENST00000435823 CFDP00746 253 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-203ENST00000435823 PVALBP20472 110 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-203ENST00000435823 NUP62P37198 522 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-203ENST00000435823 USF2Q15853 346 aaPredicted RBP8.55□□□□□ -1.04
COL28A1-203ENST00000435823 HAGHQ16775 308 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 TMEM14EPQ6UXP3 125 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 GBGT1Q8N5D6 347 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 THAP8Q8NA92 274 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 OR10P1Q8NGE3 313 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 FAM110AQ9BQ89 295 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 MARVELD1Q9BSK0 173 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 PBDC1Q9BVG4 233 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 UBQLN2Q9UHD9 624 aa8.55□□□□□ -1.04
COL28A1-203ENST00000435823 TRAV2A0A0B4J234 112 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 C7orf66A4D0T2 115 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 K7EPK0 472 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 METTL15P1P0C7V9 234 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 BCAP31P51572 246 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 PAX9P55771 341 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 S100A10P60903 97 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 DLK1P80370 383 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 ZNF90Q03938 601 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 ODF3L2Q3SX64 289 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 LINC00322Q6ZN03 302 aaPredicted RBP8.54□□□□□ -1.04
COL28A1-203ENST00000435823 WFDC3Q8IUB2 231 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 LILRB2Q8N423 598 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 RCHY1Q96PM5 261 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 SPATA25Q9BR10 227 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 MS4A6AQ9H2W1 248 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 MGAT4CQ9UBM8 478 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 U3KQE9 123 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 DNAH9Q9NYC9 4486 aa8.54□□□□□ -1.04
COL28A1-203ENST00000435823 LOC102724200A0A096LPH7 203 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-203ENST00000435823 PMS2P5A8MQ11 134 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 GOSR2O14653 212 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 CAV2P51636 162 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 AP2S1P53680 142 aaPredicted RBP8.53□□□□□ -1.04
COL28A1-203ENST00000435823 LYZP61626 148 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 OR2F1Q13607 317 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 TMEM144Q7Z5S9 345 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 BPIFCQ8NFQ6 507 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 STXBP6Q8NFX7 210 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 PPP1R14BQ96C90 147 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 TM2D3Q9BRN9 247 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 GGTLC1Q9BX51 225 aa8.53□□□□□ -1.04
COL28A1-203ENST00000435823 IGKV1OR2-108A0A075B7D4 117 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 RBMY1BA6NDE4 496 aaKnown RBP8.52□□□□□ -1.05
COL28A1-203ENST00000435823 RBMY1EA6NEQ0 496 aaKnown RBP8.52□□□□□ -1.05
COL28A1-203ENST00000435823 FNDC10F2Z333 226 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 BUB3O43684 328 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 SSNA1O43805 119 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 CCNKO75909 580 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 RBMY1DP0C7P1 496 aaKnown RBP8.52□□□□□ -1.05
COL28A1-203ENST00000435823 S100A7P31151 101 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 RRAS2P62070 204 aaPredicted RBP8.52□□□□□ -1.05
COL28A1-203ENST00000435823 RAB32Q13637 225 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 C16orf54Q6UWD8 224 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 WWC2-AS2Q96NR7 200 aa8.52□□□□□ -1.05
COL28A1-203ENST00000435823 GGACTQ9BVM4 153 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms