RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 VSIRQ9H7M9 311 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 C19orf73Q9NVV2 129 aa13.97□□□□□ -0.17
SHH-203ENST00000435425 A0A1W2PS18 150 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 DFFBO76075 338 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 HNRNPCP07910 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
SHH-203ENST00000435425 CRYBB3P26998 211 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 TAS2R30P59541 319 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 RRAS2P62070 204 aaPredicted RBP13.96□□□□□ -0.17
SHH-203ENST00000435425 USF2Q15853 346 aaPredicted RBP13.96□□□□□ -0.17
SHH-203ENST00000435425 WFDC3Q8IUB2 231 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 PBDC1Q9BVG4 233 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 TMEM231Q9H6L2 316 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 SRD5A3Q9H8P0 318 aa13.96□□□□□ -0.17
SHH-203ENST00000435425 OR4C46A6NHA9 309 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 PMS2P5A8MQ11 134 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 TSC22D2O75157 780 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 FABP1P07148 127 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 RAB32Q13637 225 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 FAM90A2PQ658T7 463 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 TMEM14EPQ6UXP3 125 aa13.95□□□□□ -0.18
SHH-203ENST00000435425 IGKV1OR2-108A0A075B7D4 117 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 A8MZ25 164 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 SSNA1O43805 119 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 PVALBP20472 110 aaPredicted RBP13.94□□□□□ -0.18
SHH-203ENST00000435425 P2RY1P47900 373 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 LYZP61626 148 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 THAP8Q8NA92 274 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 OR10P1Q8NGE3 313 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 RNF125Q96EQ8 232 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 GRAMD2BQ96HH9 432 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 TRGV9Q99603 122 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 RABAC1Q9UI14 185 aa13.94□□□□□ -0.18
SHH-203ENST00000435425 FAM24AA6NFZ4 105 aa13.93□□□□□ -0.18
SHH-203ENST00000435425 DNASE2O00115 360 aaPredicted RBP13.93□□□□□ -0.18
SHH-203ENST00000435425 NHLRC4P0CG21 123 aaPredicted RBP13.93□□□□□ -0.18
SHH-203ENST00000435425 CAV2P51636 162 aa13.93□□□□□ -0.18
SHH-203ENST00000435425 PAFAH1B2P68402 229 aa13.93□□□□□ -0.18
SHH-203ENST00000435425 IL15RAQ13261 267 aa13.93□□□□□ -0.18
SHH-203ENST00000435425 GATA2P23769 480 aaPredicted RBP13.92□□□□□ -0.18
SHH-203ENST00000435425 DLK1P80370 383 aa13.92□□□□□ -0.18
SHH-203ENST00000435425 ARL16Q0P5N6 197 aa13.92□□□□□ -0.18
SHH-203ENST00000435425 MS4A6AQ9H2W1 248 aa13.92□□□□□ -0.18
SHH-203ENST00000435425 MGAT4CQ9UBM8 478 aa13.92□□□□□ -0.18
SHH-203ENST00000435425 U3KQE9 123 aa13.92□□□□□ -0.18
SHH-203ENST00000435425 RBMY1BA6NDE4 496 aaKnown RBP13.91□□□□□ -0.18
SHH-203ENST00000435425 RBMY1EA6NEQ0 496 aaKnown RBP13.91□□□□□ -0.18
SHH-203ENST00000435425 PTTG1O95997 202 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 CD5P06127 495 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 RBMY1DP0C7P1 496 aaKnown RBP13.91□□□□□ -0.18
SHH-203ENST00000435425 LRRC37A5PQ49AS3 106 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 C16orf54Q6UWD8 224 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 TMEM144Q7Z5S9 345 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 STXBP6Q8NFX7 210 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 C11orf1Q9H5F2 150 aa13.91□□□□□ -0.18
SHH-203ENST00000435425 CST7O76096 145 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 EIF2B2P49770 351 aaKnown RBP13.9□□□□□ -0.18
SHH-203ENST00000435425 HAGHQ16775 308 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 ODF3L2Q3SX64 289 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 TMEM182Q6ZP80 229 aaPredicted RBP13.9□□□□□ -0.18
SHH-203ENST00000435425 PPP1R14BQ96C90 147 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 NPVFQ9HCQ7 196 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 ALG5Q9Y673 324 aa13.9□□□□□ -0.18
SHH-203ENST00000435425 CYP2G1PQ6ZSU1 146 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 APRG1Q8IVJ8 170 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 TMEM217Q8N7C4 229 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 BPIFCQ8NFQ6 507 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 CITED4Q96RK1 184 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 NMES1Q9C002 83 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 ZMAT4Q9H898 229 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 U3KQK5 164 aa13.89□□□□□ -0.19
SHH-203ENST00000435425 BUB3O43684 328 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 RLN2P04090 185 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 ORM2P19652 201 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 H2BFSP57053 126 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 SLC38A11Q08AI6 406 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 ZNF124Q15973 351 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 LINC00322Q6ZN03 302 aaPredicted RBP13.88□□□□□ -0.19
SHH-203ENST00000435425 GLMPQ8WWB7 406 aa13.88□□□□□ -0.19
SHH-203ENST00000435425 IGSF23A1L1A6 192 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 HELTA6NFD8 242 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 DEDDO75618 318 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 CMC4P56277 68 aaPredicted RBP13.87□□□□□ -0.19
SHH-203ENST00000435425 CYCSP99999 105 aaKnown RBP13.87□□□□□ -0.19
SHH-203ENST00000435425 FAM24BQ8N5W8 94 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 TMEM252Q8N6L7 170 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 OR1B1Q8NGR6 318 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 MAP6D1Q9H9H5 199 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 LYRM2Q9NU23 88 aaPredicted RBP13.87□□□□□ -0.19
SHH-203ENST00000435425 DOK5Q9P104 306 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 PFDN2Q9UHV9 154 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 DNAH9Q9NYC9 4486 aa13.87□□□□□ -0.19
SHH-203ENST00000435425 COL7A1Q02388 2944 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 LOC102724200A0A096LPH7 203 aaPredicted RBP13.86□□□□□ -0.19
SHH-203ENST00000435425 FNDC10F2Z333 226 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 CFDP00746 253 aaPredicted RBP13.86□□□□□ -0.19
SHH-203ENST00000435425 TEPPQ6URK8 271 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 SIGLEC15Q6ZMC9 328 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 STPG3Q8N7X2 389 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 RCHY1Q96PM5 261 aa13.86□□□□□ -0.19
SHH-203ENST00000435425 GGACTQ9BVM4 153 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms