RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DYNAPQ8N1N2 210 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 OR52R1Q8NGF1 315 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 OR51A4Q8NGJ6 313 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 WFDC5Q8TCV5 224 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 CARD19Q96LW7 228 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 OR8B2Q96RD0 313 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 HIGD2AQ9BW72 106 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 SMIM3Q9BZL3 60 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 C16orf95Q9H693 158 aa2.94□□□□□ -1.94
CCDC88A-206ENST00000430086 TOPBP1Q92547 1522 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 TUBGCP6Q96RT7 1819 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 A2MP01023 1474 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 TRGV5A0A0B4J1U4 118 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 IGHV1-58A0A0C4DH39 117 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 IGKV1-9A0A0C4DH69 117 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 HIST1H2BKO60814 126 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 NAPSAO96009 420 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 HIST1H2BJP06899 126 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 P0DMU3 169 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 FAM231AP0DMU4 169 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 FAM231CP0DMU5 169 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 RPL35P42766 123 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 RPL28P46779 137 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 TMBIM6P55061 237 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 SLC38A11Q08AI6 406 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 LYZL1Q6UWQ5 148 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 Q6ZS52 159 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 LINC00305Q7Z4B0 112 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 MSRB3Q8IXL7 192 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 Q8NAQ8 132 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 OR5D16Q8NGK9 328 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 ZNF714Q96N38 554 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 NPCDR1Q9BY65 106 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 NHP2Q9NX24 153 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 RBM7Q9Y580 266 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 FAM215AQ9Y5M1 114 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 DSCAMO60469 2012 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 VIRMAQ69YN4 1812 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 LTBP4Q8N2S1 1624 aa2.93□□□□□ -1.94
CCDC88A-206ENST00000430086 COL18A1P39060 1754 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 ADGBQ8N7X0 1667 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 REREQ9P2R6 1566 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 TRBV7-6A0A0J9YX20 115 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 MDFIC2A0A1B0GVS7 189 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 ODAMA1E959 279 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 CCDC160A6NGH7 325 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 C3orf84H3BNL1 204 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 RPL36A-HNRNPH2H7BZ11 118 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 J3QQQ9 107 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 NDUFB3O43676 98 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 IGKV1-16P04430 117 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 PAEPP09466 180 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 ZNF728P0DKX0 622 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 DNAJB13P59910 316 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 HBBP68871 147 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 HIST1H1AQ02539 215 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 PABPC1L2AQ5JQF8 200 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 SLC35E3Q7Z769 313 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 PFN4Q8NHR9 129 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 C2orf88Q9BSF0 95 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 HS3ST2Q9Y278 367 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 TRAPPC8Q9Y2L5 1435 aa2.92□□□□□ -1.94
CCDC88A-206ENST00000430086 ZNF638Q14966 1978 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 TRAV7A0A075B6U4 112 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 A0A1B0GV90 55 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 GNRH2O43555 120 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 CXCL1P09341 107 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 HLA-EP13747 358 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 ZNF22P17026 224 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 RNASE4P34096 147 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 FXYD2P54710 66 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 NCS1P62166 190 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 KISS1Q15726 138 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 AMMECR1LQ6DCA0 310 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 MMGT1Q8N4V1 131 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 TMEM203Q969S6 136 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 PRADC1Q9BSG0 188 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 SIPA1L1O43166 1804 aa2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 MED1Q15648 1581 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-206ENST00000430086 TRAV13-1A0A0B4J241 112 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 LOC107984640A0A0U1RRK4 108 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 FAM92AA1XBS5 289 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 C11orf86A6NJI1 115 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 LINC00587B1AMM8 73 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 F8W036 122 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 H7C2G1 150 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 COX6A1P12074 109 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 ARPP19P56211 112 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 SUPT4H1P63272 117 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 SELENOWP63302 87 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 PRR9Q5T870 116 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 TMEM136Q6ZRR5 245 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 PHF5AQ7RTV0 110 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 LYPD6Q86Y78 171 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 PDZD9Q8IXQ8 264 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 C1orf64Q8NEQ6 169 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 SLC30A7Q8NEW0 376 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 OR4S1Q8NGB4 309 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 OR4E2Q8NGC2 313 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 MCEEQ96PE7 176 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms