RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 LHFPL4Q7Z7J7 247 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 PDPNQ86YL7 162 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 VSTM2AQ8TAG5 236 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 TMEM167AQ8TBQ9 72 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 TMEM186Q96B77 213 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 V9GYV3 84 aa8.59□□□□□ -1.03
CUX1-205ENST00000425244 USP9YO00507 2555 aaPredicted RBP8.58□□□□□ -1.04
CUX1-205ENST00000425244 IGHV3-21A0A0B4J1V1 117 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 CGB1A6NKQ9 187 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 SNURFLB1AK76 121 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 NDUFS7O75251 213 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 LGALS4P56470 323 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 C19orf35Q6ZS72 473 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 CMTM2Q8TAZ6 248 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 CACNG8Q8WXS5 425 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 LINC00479Q96M42 142 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 SLC25A2Q9BXI2 301 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 ZNF355PQ9NSJ1 428 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 FBN2P35556 2912 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 K7EP13 123 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 IGLV2-23P01705 113 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 CD33P20138 364 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 YPEL3P61236 119 aaPredicted RBP8.58□□□□□ -1.04
CUX1-205ENST00000425244 VMA21Q3ZAQ7 101 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 C10orf113Q5VZT2 155 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 MS4A10Q96PG2 267 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 CHODLQ9H9P2 273 aa8.58□□□□□ -1.04
CUX1-205ENST00000425244 MRPL36Q9P0J6 103 aaKnown RBP8.58□□□□□ -1.04
CUX1-205ENST00000425244 HELZ2Q9BYK8 2649 aaKnown RBP8.57□□□□□ -1.04
CUX1-205ENST00000425244 MOSP00540 346 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 PPBPP02775 128 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 CRISP2P16562 243 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 SUB1P53999 127 aaKnown RBP eCLIP8.57□□□□□ -1.04
CUX1-205ENST00000425244 BAGE3Q86Y29 109 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 BAGE2Q86Y30 109 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 FAM167A-AS1Q96KT0 104 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 CLUHP3Q96NS8 147 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 C19orf24Q9BVV8 132 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 LY96Q9Y6Y9 160 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 ABCA12Q86UK0 2595 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 ZFHX3Q15911 3703 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 A0A1W2PPI3 338 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 CA1P00915 261 aaPredicted RBP8.57□□□□□ -1.04
CUX1-205ENST00000425244 IGHV1-8P0DP01 117 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 ORM2P19652 201 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 IQCJQ1A5X6 159 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 TMEM155Q4W5P6 130 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 TNFRSF14Q92956 283 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 PAXXQ9BUH6 204 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 ARL2-SNX15V9GYD0 113 aa8.57□□□□□ -1.04
CUX1-205ENST00000425244 TRAV34A0A0B4J273 112 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 BRS3P32247 399 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 SRSF1Q07955 248 aaKnown RBP eCLIP8.56□□□□□ -1.04
CUX1-205ENST00000425244 MRPL54Q6P161 138 aaKnown RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 OR4A5Q8NH83 315 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 ST6GALNAC6Q969X2 333 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 MRPL32Q9BYC8 188 aaKnown RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 RAB1BQ9H0U4 201 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 NAT8BQ9UHF3 227 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 ZFP30Q9Y2G7 519 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 A0A1W2PRE2 83 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 ZNF705FA8MVS1 300 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 F2Z2F3 143 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 SERF1AO75920 110 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 ZNF705DP0CH99 300 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 ZNF705BP0CI00 300 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 COX7A1P24310 79 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 CNTFRP26992 372 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 S100A7P31151 101 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 DLX6P56179 175 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 TNXAQ16473 311 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 RNF151Q2KHN1 245 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 KIAA1644Q3SXP7 199 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 PNKDQ8N490 385 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 TCRBV4S1A1TA0A5B7 111 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 PSMB11A5LHX3 300 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 CBY3A6NI87 242 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 TNFRSF13BO14836 293 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 COL8A1P27658 744 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 SELENOTP62341 195 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 IBA57Q5T440 356 aaKnown RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 RUSC1-AS1Q66K80 236 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 PATE2Q6UY27 113 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 OR1B1Q8NGR6 318 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 BLNKQ8WV28 456 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 SSBP3Q9BWW4 388 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 TMEM133Q9H2Q1 129 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 TP53TG3Q9ULZ0 132 aa8.56□□□□□ -1.04
CUX1-205ENST00000425244 AMMECR1Q9Y4X0 333 aaPredicted RBP8.56□□□□□ -1.04
CUX1-205ENST00000425244 DOPEY2Q9Y3R5 2298 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 ARHGAP32A7KAX9 2087 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 TRAV9-1A0A075B6T8 112 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 PPOXP50336 477 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 LINC00305Q7Z4B0 112 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 LINC00311Q8N616 119 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 OR1L4Q8NGR5 311 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 SGK494Q96LW2 274 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 SAMD10Q9BYL1 202 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 IGKV1D-37A0A075B6S9 117 aa8.55□□□□□ -1.04
CUX1-205ENST00000425244 MC5RP33032 325 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 306 ms