RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 APOBEC3AP31941 199 aaPredicted RBP8.61□□□□□ -1.03
USP54-204ENST00000422491 LGALS7P47929 136 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 RBPJQ06330 500 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 OR2K2Q8NGT1 345 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 BLNKQ8WV28 456 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 NPIPB3Q92617 1050 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 AP5S1Q9NUS5 200 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 A0A0G2JLM5 398 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 E7EUB6 86 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 INS-IGF2F8WCM5 200 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 CFHR2P36980 270 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 KIR3DS1Q14943 382 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 GUSBP1Q15486 140 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 MBNL2Q5VZF2 373 aaKnown RBP8.61□□□□□ -1.03
USP54-204ENST00000422491 BOD1L2Q8IYS8 172 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 THAP8Q8NA92 274 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 OR10AG1Q8NH19 301 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 NAA38Q9BRA0 125 aaKnown RBP8.61□□□□□ -1.03
USP54-204ENST00000422491 DEFB127Q9H1M4 99 aa8.61□□□□□ -1.03
USP54-204ENST00000422491 TIMM8BQ9Y5J9 83 aaPredicted RBP8.61□□□□□ -1.03
USP54-204ENST00000422491 CECR9P0C854 216 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 OR1N2Q8NGR9 330 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 MRPL36Q9P0J6 103 aaKnown RBP8.6□□□□□ -1.03
USP54-204ENST00000422491 ABI3Q9P2A4 366 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 DYSFO75923 2080 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 KLK10O43240 276 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 CEACAM3P40198 252 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 ERHP84090 104 aaKnown RBP8.6□□□□□ -1.03
USP54-204ENST00000422491 SPRNQ5BIV9 151 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 Q6ZT83 130 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 STXBP6Q8NFX7 210 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 NPFFR1Q9GZQ6 430 aa8.6□□□□□ -1.03
USP54-204ENST00000422491 C9orf172C9J069 976 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 IGHV3-48P01763 117 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 TCRAP04437 139 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 MZT1Q08AG7 82 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 C1orf185Q5T7R7 199 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 C16orf54Q6UWD8 224 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 BHLHA15Q7RTS1 189 aaPredicted RBP8.59□□□□□ -1.03
USP54-204ENST00000422491 TMEM186Q96B77 213 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 DAZAP1Q96EP5 407 aaKnown RBP8.59□□□□□ -1.03
USP54-204ENST00000422491 RAB9BQ9NP90 201 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 JKAMPQ9P055 326 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 ZNRD1Q9P1U0 126 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 HILPDAQ9Y5L2 63 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 DSCAMO60469 2012 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 A0A096LNJ9 63 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 CFIP05156 583 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 SMIM17P0DL12 118 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 ACP1P24666 158 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 CSN1S1P47710 185 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 WT1-ASQ06250 92 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 HSD52Q0P140 79 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 PMS2CLQ68D20 193 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 ADAMTSL5Q6ZMM2 481 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 OR5A1Q8NGJ0 315 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 VSTM2AQ8TAG5 236 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 TANC2Q9HCD6 1990 aa8.59□□□□□ -1.03
USP54-204ENST00000422491 COL27A1Q8IZC6 1860 aaPredicted RBP8.59□□□□□ -1.04
USP54-204ENST00000422491 A0A1W2PPM0 123 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 CGB1A6NKQ9 187 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 PPIAL4GP0DN37 164 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 DUX4L9Q6RFH8 374 aaPredicted RBP8.58□□□□□ -1.04
USP54-204ENST00000422491 SLC25A48Q6ZT89 311 aaKnown RBP8.58□□□□□ -1.04
USP54-204ENST00000422491 RBMXL3Q8N7X1 1067 aaKnown RBP8.58□□□□□ -1.04
USP54-204ENST00000422491 GATD1Q8NB37 220 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 MDS2Q8NDY4 140 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 FAM222BQ8WU58 562 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 PERPQ96FX8 193 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 KNTC1P50748 2209 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 MED13Q9UHV7 2174 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 TRGV5A0A0B4J1U4 118 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 SMAD7O15105 426 aaKnown RBP8.58□□□□□ -1.04
USP54-204ENST00000422491 LHBP01229 141 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 GP9P14770 177 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 COL8A1P27658 744 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 MSMPQ1L6U9 139 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 HES3Q5TGS1 186 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 Q71RC1 249 aaPredicted RBP8.58□□□□□ -1.04
USP54-204ENST00000422491 UBALD2Q8IYN6 164 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 OR5AN1Q8NGI8 311 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 OR4A5Q8NH83 315 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 RND1Q92730 232 aa8.58□□□□□ -1.04
USP54-204ENST00000422491 KLRC4-KLRK1H3BQV0 150 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 SIVA1O15304 175 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 Q86TA4 180 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 ZCCHC24Q8N2G6 241 aaKnown RBP8.57□□□□□ -1.04
USP54-204ENST00000422491 CIARTQ8N365 385 aaPredicted RBP8.57□□□□□ -1.04
USP54-204ENST00000422491 OR9G4Q8NGQ1 327 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 OSR1Q8TAX0 266 aaPredicted RBP8.57□□□□□ -1.04
USP54-204ENST00000422491 SPRY4Q9C004 299 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 Q9H3A6 140 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 SPCS1Q9Y6A9 102 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 NAV3Q8IVL0 2385 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 AHCTF1Q8WYP5 2266 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 A1L4Q6 167 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 IGLV1-44P01699 117 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 FAM106CPP0CH98 169 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 ORM2P19652 201 aa8.57□□□□□ -1.04
USP54-204ENST00000422491 HOXC12P31275 282 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms