RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ARRDC1-AS1Q9H2J1 176 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 SERTAD4Q9NUC0 356 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 HSPB8Q9UJY1 196 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 FZR1Q9UM11 496 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 TRIOO75962 3097 aa4.61□□□□□ -1.67
CCDC88A-203ENST00000412148 RANBP2P49792 3224 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 IGHV1-24A0A0C4DH33 117 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 RBP4P02753 201 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TCRAP04437 139 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 MYOD1P15172 320 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 CEACAM8P31997 349 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TFPI2P48307 235 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TCL1AP56279 114 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 VMA21Q3ZAQ7 101 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 SPRNQ5BIV9 151 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF493Q6ZR52 646 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 LINC00305Q7Z4B0 112 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 FAM19A2Q8N3H0 131 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 C22orf15Q8WYQ4 148 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 MRPL20Q9BYC9 149 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 WNT10AQ9GZT5 417 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 SCRT2Q9NQ03 307 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 USP34Q70CQ2 3546 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 LOC105371242A0A075B767 164 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 OR4C46A6NHA9 309 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 FBLL1A6NHQ2 334 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TCF21O43680 179 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 CD5LO43866 347 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 NBEAP1P0C6P0 100 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 GATA2P23769 480 aaPredicted RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 FBLN7Q53RD9 439 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TMEM75Q8N9X5 138 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 FDCSPQ8NFU4 85 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 OR10W1Q8NGF6 305 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 PIFOQ8TCI5 191 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 GTSF1Q8WW33 167 aa4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 H1FXQ92522 213 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 INTS1Q8N201 2190 aaKnown RBP4.6□□□□□ -1.67
CCDC88A-203ENST00000412148 TRAV5A0A0B4J249 113 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SERTM2A0A1B0GWG4 89 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 MOSP00540 346 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 P01737 135 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 PYYP10082 97 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 HIST1H1AQ02539 215 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF474Q6S9Z5 364 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 Q86TA4 180 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 OR2T6Q8NHC8 308 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 NPIPB3Q92617 1050 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 LEAP2Q969E1 77 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF835Q9Y2P0 537 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 A0A1W2PPI3 338 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SIVA1O15304 175 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 LEPROTL1O95214 131 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 CA1P00915 261 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 IGLV2-11P01706 119 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SLC25A5P05141 298 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 NTF3P20783 257 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SLC35B1P78383 322 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 RBPJQ06330 500 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 BATFQ16520 125 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 BVES-AS1Q5T3Y7 98 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 RNASEKQ6P5S7 137 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SLC25A34Q6PIV7 304 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 RBMXL3Q8N7X1 1067 aaKnown RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 OR1N2Q8NGR9 330 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 FAM122AQ96E09 287 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 LINC00479Q96M42 142 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 ZNF48Q96MX3 618 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 SSBP3Q9BWW4 388 aaPredicted RBP4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 HINT2Q9BX68 163 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 MAP1LC3CQ9BXW4 147 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 U3KQK5 164 aa4.59□□□□□ -1.67
CCDC88A-203ENST00000412148 LINC01546A6NGU7 62 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 E7EUB6 86 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 M0R1B8 84 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 TAX1BP3O14907 124 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 SPRY3O43610 288 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 SPINK4O60575 86 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 GNG10P50151 68 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 CCL11P51671 97 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 SEC11AP67812 179 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 MLANAQ16655 118 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 Q56UQ5 140 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 C1orf185Q5T7R7 199 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 LCN12Q6JVE5 192 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 PIP4P1Q86T03 277 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 CCL13Q99616 98 aa4.59□□□□□ -1.68
CCDC88A-203ENST00000412148 CNTRLQ7Z7A1 2325 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 PGPA6NDG6 321 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 HSBP1L1C9JCN9 74 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 K7EM74 188 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 TOX4O94842 621 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 COX8AP10176 69 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 CD40P25942 277 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 PCP4P48539 62 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 SSBP2P81877 361 aaPredicted RBP4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 FOXC1Q12948 553 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM155Q4W5P6 130 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 TMEM200BQ69YZ2 307 aa4.58□□□□□ -1.68
CCDC88A-203ENST00000412148 FAM216BQ8N7L0 139 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms