RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MRAP2Q96G30 205 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 TMEM167BQ9NRX6 74 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 GAGE2DQ9UEU5 116 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 TIMM9Q9Y5J7 89 aa9.86□□□□□ -0.83
HMGB1-206ENST00000405805 MLNRO43193 412 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 CD5LO43866 347 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 P01737 135 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 EFNB3Q15768 340 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 LCNL1Q6ZST4 164 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 NPIPB3Q92617 1050 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 BEX4Q9NWD9 120 aaPredicted RBP9.85□□□□□ -0.83
HMGB1-206ENST00000405805 MOSP00540 346 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 DUTP33316 252 aaKnown RBP9.85□□□□□ -0.83
HMGB1-206ENST00000405805 TNXAQ16473 311 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 KIR3DL3Q8N743 410 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 GGTLC1Q9BX51 225 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 ZADH2Q8N4Q0 377 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 IGKV3D-15A0A087WSY6 115 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 TRAV17A0A0B4J275 112 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 TEX48A0A1B0GUV7 120 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 KLK10O43240 276 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 FRMD6-AS1P0C7T7 363 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 PYYP10082 97 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 NPPCP23582 126 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 PRTN3P24158 256 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 CD40P25942 277 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 LYZP61626 148 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 C10orf55Q5SWW7 151 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 MGST2Q99735 147 aa9.85□□□□□ -0.83
HMGB1-206ENST00000405805 GAGE13Q4V321 117 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 C9orf106Q8NAJ2 232 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 AGMATQ9BSE5 352 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 MRPL16Q9NX20 251 aaKnown RBP9.84□□□□□ -0.83
HMGB1-206ENST00000405805 ZNF256Q9Y2P7 627 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-206ENST00000405805 C3orf56Q8N813 242 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 SH2D7A6NKC9 451 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-206ENST00000405805 TIMM23BQ5SRD1 257 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 FAM71F2Q6NXP2 309 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 RNF138Q8WVD3 245 aa9.84□□□□□ -0.83
HMGB1-206ENST00000405805 PGPA6NDG6 321 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 MPDU1O75352 247 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 WISP2O76076 250 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 PPBPP02775 128 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 PF4V1P10720 104 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 PPIFP30405 207 aaKnown RBP9.83□□□□□ -0.84
HMGB1-206ENST00000405805 SUB1P53999 127 aaKnown RBP eCLIP9.83□□□□□ -0.841e-6■■■■■ 36.5
HMGB1-206ENST00000405805 GNG5P63218 68 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 MORN2Q502X0 79 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 TEX43Q6ZNM6 134 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 CD177Q8N6Q3 437 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 SNRNP40Q96DI7 357 aaKnown RBP9.83□□□□□ -0.84
HMGB1-206ENST00000405805 PAXXQ9BUH6 204 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 AMMECR1Q9Y4X0 333 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-206ENST00000405805 S4R3C0 116 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 CDX4O14627 284 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-206ENST00000405805 SEC11AP67812 179 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF146Q15072 292 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 OR52E5Q8NH55 327 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 AP5S1Q9NUS5 200 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 LIPFP07098 398 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 C10orf113Q5VZT2 155 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 Q6ZT83 130 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 C10orf126Q8N4M7 172 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF479Q96JC4 524 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 EAF1Q96JC9 268 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-206ENST00000405805 RNF7Q9UBF6 113 aa9.83□□□□□ -0.84
HMGB1-206ENST00000405805 TRBV20-1A0A075B6N2 111 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 CCL3L1P16619 93 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 CD300EQ496F6 205 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-206ENST00000405805 PDPNQ86YL7 162 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF295-AS1Q8N0V1 137 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ATG2AQ2TAZ0 1938 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 TLN1Q9Y490 2541 aaKnown RBP9.82□□□□□ -0.84
HMGB1-206ENST00000405805 SAA2-SAA4A0A096LPE2 208 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 IL4P05112 153 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 SAA2P0DJI9 122 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-206ENST00000405805 NRN1LQ496H8 165 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 DUX4L9Q6RFH8 374 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF502Q8TBZ5 544 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF71Q9NQZ8 489 aaPredicted RBP9.82□□□□□ -0.84
HMGB1-206ENST00000405805 CEP192Q8TEP8 1941 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 FAM181BA6NEQ2 426 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ZNF138P52744 262 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 Q6ZR03 302 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 Q6ZS49 121 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 PRNDQ9UKY0 176 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 LMO1P25800 156 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 FAM27E3Q08E93 113 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 ASCL2Q99929 193 aa9.82□□□□□ -0.84
HMGB1-206ENST00000405805 TRBV9A0A0B4J1U6 114 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 A0A1W2PS18 150 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 hADV38S2A0JD32 116 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 TSPAN13O95857 204 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 CD24P25063 80 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 GUSBP1Q15486 140 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 SRSF7Q16629 238 aaKnown RBP eCLIP9.81□□□□□ -0.841e-10■■■■□ 20
HMGB1-206ENST00000405805 IQCF6A8MYZ5 107 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 TRAV8-1A0A0A6YYK1 113 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 IGHV3-35A0A0C4DH35 117 aa9.81□□□□□ -0.84
HMGB1-206ENST00000405805 C8orf88P0DMB2 117 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms