RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 DNAJC30Q96LL9 226 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 FBLN5Q9UBX5 448 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 GREB1Q4ZG55 1949 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 IGLV3-12A0A075B6K2 115 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 CSRP1P21291 193 aaKnown RBP10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 NPC2P61916 151 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 COL4A1P02462 1669 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 TP53BP1Q12888 1972 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 TRGV1A0A0A0MS02 117 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 OOSP1A8MZH6 123 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 TGFBR3LH3BV60 316 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 SLC25A39Q9BZJ4 359 aaPredicted RBP10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 C11orf44Q8N8P7 122 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 LINC00477Q96M19 166 aa10.58□□□□□ -0.72
CCDC88C-204ENST00000389857 NDUFAF3Q9BU61 184 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 IL18BPO95998 194 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 KIF26BQ2KJY2 2108 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 RNF5Q99942 180 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 THADAQ6YHU6 1953 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 F8VVB4 439 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 F8VWA3 439 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 VCYO14598 125 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 INSP01308 110 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 EFNA4P52798 201 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 DEFB121Q5J5C9 76 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 CACNA1GO43497 2377 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 TRGV9Q99603 122 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 SCN10AQ9Y5Y9 1956 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 IGHV3-73A0A0B4J1V6 119 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 FAM223BA6NKX1 122 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 MPZP25189 248 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 CFHR1Q03591 330 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 ZNF876PQ49A33 203 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 TPTE2P1Q5T6R2 138 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 TEX38Q6PEX7 206 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 C1QL4Q86Z23 238 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 FAM223AQ8IWN6 122 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 KLF12Q9Y4X4 402 aa10.57□□□□□ -0.72
CCDC88C-204ENST00000389857 ZNF138P52744 262 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 RPL32P62910 135 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 SS18Q15532 418 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 LAIR2Q6ISS4 152 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 OR10W1Q8NGF6 305 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 USMG5Q96IX5 58 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 TMEM242Q9NWH2 141 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 NYNRINQ9P2P1 1898 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 GZMBP10144 247 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 SHISA3A0PJX4 238 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 INS-IGF2F8WCM5 200 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 RPL15P61313 204 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 WNK3Q9BYP7 1800 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 LYNX1G3V0Z9 82 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 LYNX1P0DP58 116 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 RPL35AP18077 110 aaKnown RBP10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 TIMP3P35625 211 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 DOCK3Q8IZD9 2030 aa10.56□□□□□ -0.72
CCDC88C-204ENST00000389857 PMS2P5A8MQ11 134 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 D6R8Y8 96 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 RIPPLY3P57055 190 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 ZNF672Q499Z4 452 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 TMEM200BQ69YZ2 307 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 C9orf139Q6ZV77 190 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 SPACA3Q8IXA5 215 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 RNF166Q96A37 237 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 HOXD3P31249 432 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 GAGE2BQ13066 116 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 C6orf226Q5I0X4 101 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 RTTNQ86VV8 2226 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 M0R1W7 72 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 MLNRO43193 412 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 TBX6O95947 436 aaPredicted RBP10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 IGHV1-8P0DP01 117 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 IGHV1-3A0A0C4DH29 117 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 FAM90A2PQ658T7 463 aa10.55□□□□□ -0.72
CCDC88C-204ENST00000389857 CEACAM8P31997 349 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 SSBP2P81877 361 aaPredicted RBP10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 ACTL10Q5JWF8 245 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 HAPLN4Q86UW8 402 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 CSRP3P50461 194 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 B4DSR2 109 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TMEM249Q2WGJ8 235 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 WDR83OSQ9Y284 106 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 LSM4Q9Y4Z0 139 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 A0A1B0GWJ7 208 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 ID3Q02535 119 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TMEM219Q86XT9 240 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TRAV5A0A0B4J249 113 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 MYMXA0A1B0GTQ4 84 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 SRRM4A7MD48 611 aaKnown RBP10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TFF1P04155 84 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 PSG1P11464 419 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 C2orf82Q6UX34 121 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TREML4Q6UXN2 200 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 NRXN2Q9P2S2 1712 aa10.54□□□□□ -0.72
CCDC88C-204ENST00000389857 TNFRSF6BO95407 300 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BKO60814 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BJP06899 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BOP23527 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BBP33778 126 aa10.53□□□□□ -0.72
CCDC88C-204ENST00000389857 HIST1H2BDP58876 126 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms