RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TRAV5A0A0B4J249 113 aa11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 PLGLB1Q02325 96 aa11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 SRSF6Q13247 344 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 NEU4Q8WWR8 484 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 TTTY12Q9BZ98 90 aa11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 ZNF257Q9Y2Q1 563 aa11.9□□□□□ -0.5
VPS9D1-201ENST00000389386 NCR2O95944 276 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 CKS1BP61024 79 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 UBE2L3P68036 154 aaKnown RBP11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 PLP2Q04941 152 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 CD300EQ496F6 205 aaPredicted RBP11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF766Q5HY98 468 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 MORN5Q5VZ52 161 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF329Q86UD4 541 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 BOD1L2Q8IYS8 172 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 OR13A1Q8NGR1 328 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF747Q9BV97 191 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 C15orf61A6NNL5 157 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 GTSF1Q8WW33 167 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 FAM173AQ9BQD7 235 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 SLC25A2Q9BXI2 301 aa11.89□□□□□ -0.51
VPS9D1-201ENST00000389386 GAGE12HA6NDE8 117 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 FABP2P12104 132 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 HSPE1P61604 102 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 ADAMTSL5Q6ZMM2 481 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 DEFB127Q9H1M4 99 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 SOX21Q9Y651 276 aaPredicted RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 IGKV3D-15A0A087WSY6 115 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 SLC25A17O43808 307 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 TFF1P04155 84 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 SHISA2Q6UWI4 295 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 ADTRPQ96IZ2 230 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 PGLYRP4Q96LB8 373 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 KLF13Q9Y2Y9 288 aaPredicted RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 TIMM8BQ9Y5J9 83 aaPredicted RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 TSSC4Q9Y5U2 329 aaPredicted RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 WNT9BO14905 357 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF137PP52743 207 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 NANOS1Q8WY41 292 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 RPP21Q9H633 154 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 C12orf49Q9H741 205 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 ENY2Q9NPA8 101 aa11.88□□□□□ -0.51
VPS9D1-201ENST00000389386 A1L4Q6 167 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 MGST3O14880 152 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 GRPP07492 148 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 HOXA4Q00056 320 aaPredicted RBP11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 LTC4SQ16873 150 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 PRSS22Q9GZN4 317 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 TMEM14BQ9NUH8 114 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 ACACAQ13085 2346 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 A8MWL6 223 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 C15orf65H3BRN8 121 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 RPL39P5Q59GN2 51 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 OR9G4Q8NGQ1 327 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 ABHD17AQ96GS6 310 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 S1PR3Q99500 378 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 DCTN5Q9BTE1 182 aa11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 MRPL32Q9BYC8 188 aaKnown RBP11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 FOXA2Q9Y261 457 aaPredicted RBP11.87□□□□□ -0.51
VPS9D1-201ENST00000389386 SMAD7O15105 426 aaKnown RBP11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 SIVA1O15304 175 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 ADH4P08319 380 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 SAMD5Q5TGI4 173 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 CCDC144NLQ6NUI1 221 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 LINC00322Q6ZN03 302 aaPredicted RBP11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 FA2HQ7L5A8 372 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 PIP4P2Q8N4L2 257 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 OR9G1Q8NH87 305 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF479Q96JC4 524 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 APC2O95996 2303 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 KLK10O43240 276 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 PYYP10082 97 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 MYOD1P15172 320 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 MEOX1P50221 254 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 ZNF788Q6ZQV5 615 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 OR4X2Q8NGF9 303 aa11.86□□□□□ -0.51
VPS9D1-201ENST00000389386 ATMQ13315 3056 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 SPINT2O43291 252 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 CSN3P07498 182 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 TMEM116Q8NCL8 245 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 OR2Z1Q8NG97 314 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 HINT2Q9BX68 163 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 B4GALT7Q9UBV7 327 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 MLANAQ16655 118 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 CT83Q5H943 113 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 FOXI2Q6ZQN5 318 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 RBPMS2Q6ZRY4 209 aaKnown RBP11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 INSIG2Q9Y5U4 225 aa11.85□□□□□ -0.51
VPS9D1-201ENST00000389386 CHEK1O14757 476 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 GNG5P63218 68 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 C5orf64Q2M2E5 130 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 ALKBH6Q3KRA9 238 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 TIMM23BQ5SRD1 257 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 SPATA25Q9BR10 227 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 MLST8Q9BVC4 326 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 METRNQ9UJH8 293 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 SRRM4A7MD48 611 aaKnown RBP11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 TM4SF5O14894 197 aa11.84□□□□□ -0.51
VPS9D1-201ENST00000389386 FAM90A1Q86YD7 464 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms