RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TNFRSF19Q9NS68 423 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 SPTBN4Q9H254 2564 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 ORM2P19652 201 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 SUB1P53999 127 aaKnown RBP eCLIP10.66□□□□□ -0.7
CCDC3-202ENST00000378839 PRRX1P54821 245 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 RELQ04864 619 aaPredicted RBP10.66□□□□□ -0.7
CCDC3-202ENST00000378839 C8orf46Q8TAG6 207 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 TNFRSF14Q92956 283 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 PAXXQ9BUH6 204 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 ONECUT1Q9UBC0 465 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 ITPR1Q14643 2758 aa10.66□□□□□ -0.7
CCDC3-202ENST00000378839 DLEU1O43261 78 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 MYCNOSP40205 109 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 TCL1AP56279 114 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 KLRD1Q13241 179 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 PPP1R27Q86WC6 154 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 FAM103A1Q9BTL3 118 aaKnown RBP10.65□□□□□ -0.7
CCDC3-202ENST00000378839 OR1L6Q8NGR2 347 aa10.65□□□□□ -0.7
CCDC3-202ENST00000378839 NOL4LQ96MY1 436 aaPredicted RBP10.65□□□□□ -0.7
CCDC3-202ENST00000378839 H3BTX0 84 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 IER3P46695 156 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 ARF6P62330 175 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 C11orf71Q6IPW1 123 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 OR1B1Q8NGR6 318 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 OR5R1Q8NH85 324 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 SGK494Q96LW2 274 aa10.65□□□□□ -0.71
CCDC3-202ENST00000378839 ABCA1O95477 2261 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 TMEM8BA6NDV4 472 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 TIMM23O14925 209 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 RPEL1Q2QD12 228 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 MRPL18Q9H0U6 180 aaKnown RBP10.64□□□□□ -0.71
CCDC3-202ENST00000378839 POLR3KQ9Y2Y1 108 aaPredicted RBP10.64□□□□□ -0.71
CCDC3-202ENST00000378839 SELENOKQ9Y6D0 94 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 ISLRO14498 428 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 KLRB1Q12918 225 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 Q71RC1 249 aaPredicted RBP10.64□□□□□ -0.71
CCDC3-202ENST00000378839 TMEM116Q8NCL8 245 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 RNF24Q9Y225 148 aa10.64□□□□□ -0.71
CCDC3-202ENST00000378839 AMMECR1Q9Y4X0 333 aaPredicted RBP10.64□□□□□ -0.71
CCDC3-202ENST00000378839 RPLP1P05386 114 aaKnown RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 MGST1P10620 155 aaKnown RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 RANP62826 216 aaKnown RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 VN1R17PQ8TDU5 208 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 RPEQ96AT9 228 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 TMEM18Q96B42 140 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 MS4A10Q96PG2 267 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 F11RQ9Y624 299 aaKnown RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 A0A1W2PRD5 423 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 A0A1W2PRF3 423 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 A0A1W2PRM7 423 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 SELENOTP62341 195 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 OR1L4Q8NGR5 311 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 BLNKQ8WV28 456 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 SSBP3Q9BWW4 388 aaPredicted RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 HILPDAQ9Y5L2 63 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 RAB4BP61018 213 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 DNLZQ5SXM8 178 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 OR8B3Q8NGG8 313 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 SRSF12Q8WXF0 261 aaKnown RBP10.63□□□□□ -0.71
CCDC3-202ENST00000378839 BTF3L4Q96K17 158 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 OR8B2Q96RD0 313 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 TRGV9Q99603 122 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 OSTCQ9NRP0 149 aa10.63□□□□□ -0.71
CCDC3-202ENST00000378839 I3L2K1 104 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 IQCJQ1A5X6 159 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 TIGITQ495A1 244 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 CFHR4Q92496 578 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 RNF2Q99496 336 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 C7orf69Q9H7B7 122 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 CDC42EP3Q9UKI2 254 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 COL6A6A6NMZ7 2263 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 CHD8Q9HCK8 2581 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 PEX7O00628 323 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 NDUFS7O75251 213 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 RBP4P02753 201 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 PRB4P10163 310 aaPredicted RBP10.62□□□□□ -0.71
CCDC3-202ENST00000378839 CX3CL1P78423 397 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 TPTE2P1Q5T6R2 138 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 DYNAPQ8N1N2 210 aa10.62□□□□□ -0.71
CCDC3-202ENST00000378839 SNURFLB1AK76 121 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 GP9P14770 177 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 PAX1P15863 534 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 IBA57Q5T440 356 aaKnown RBP10.61□□□□□ -0.71
CCDC3-202ENST00000378839 SMIM27A0A1W2PRY6 76 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 CORTO00230 105 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 LIPFP07098 398 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 IGLC1P0CG04 106 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 BPIFB3P59826 476 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 KIAA1644Q3SXP7 199 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 LBHQ53QV2 105 aaPredicted RBP10.61□□□□□ -0.71
CCDC3-202ENST00000378839 TMEM136Q6ZRR5 245 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 TRAV9-1A0A075B6T8 112 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 PRR31Q5SQ13 230 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 LINC00322Q6ZN03 302 aaPredicted RBP10.61□□□□□ -0.71
CCDC3-202ENST00000378839 WNT10AQ9GZT5 417 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 NAGKQ9UJ70 344 aa10.61□□□□□ -0.71
CCDC3-202ENST00000378839 PSG1P11464 419 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 KLF17Q5JT82 389 aaPredicted RBP10.6□□□□□ -0.71
CCDC3-202ENST00000378839 MBD6Q96DN6 1003 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 VWC2LB2RUY7 222 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms