RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SCRT1Q9BWW7 348 aa7.34□□□□□ -1.23
LIG3-202ENST00000378526 C12orf76Q8N812 135 aaPredicted RBP7.34□□□□□ -1.23
LIG3-202ENST00000378526 TMEM54Q969K7 222 aa7.34□□□□□ -1.23
LIG3-202ENST00000378526 LRP6O75581 1613 aa7.34□□□□□ -1.24
LIG3-202ENST00000378526 DUSP14O95147 198 aaKnown RBP7.34□□□□□ -1.24
LIG3-202ENST00000378526 C6orf226Q5I0X4 101 aa7.34□□□□□ -1.24
LIG3-202ENST00000378526 SPATA31B1PQ5VZV4 182 aa7.34□□□□□ -1.24
LIG3-202ENST00000378526 NPYP01303 97 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 VN1R2Q8NFZ6 395 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 LINC01587Q99440 93 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 C18orf12Q96KH6 178 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 REG1AP05451 166 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 MYF5P13349 255 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 FAM78AQ5JUQ0 283 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 IGHV3OR15-7A0A075B7D8 119 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 RNF126Q9BV68 326 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 DSCAML1Q8TD84 2053 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 UBE2BP63146 152 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 MIR17HGQ75NE6 70 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 SIGLEC12Q96PQ1 595 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 TM2D1Q9BX74 207 aa7.33□□□□□ -1.24
LIG3-202ENST00000378526 MSGN1A6NI15 193 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 FAM104BQ5XKR9 115 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 REG4Q9BYZ8 158 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 FGF22Q9HCT0 170 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 RETNQ9HD89 108 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 DLL3Q9NYJ7 618 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 PKIGQ9Y2B9 76 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 SDK2Q58EX2 2172 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 UBR3Q6ZT12 1888 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 TCRBV4S1A1TA0A5B7 111 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 MORN5Q5VZ52 161 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 ATP6V0E2Q8NHE4 81 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 SELENOKQ9Y6D0 94 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 IGLV3-16A0A075B6K0 115 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 UQCRQO14949 82 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 CRYGNQ8WXF5 182 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 PTH2Q96A98 100 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 PRR15LQ9BU68 103 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 FOXQ1Q9C009 403 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 TRAV12-1A0A0B4J245 112 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 Q6ZS52 159 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 CT55Q8WUE5 264 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 A0A0U1RRA0 63 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 WTIPA6NIX2 430 aaPredicted RBP7.32□□□□□ -1.24
LIG3-202ENST00000378526 PSG8Q9UQ74 426 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 BRCA1P38398 1863 aaKnown RBP7.32□□□□□ -1.24
LIG3-202ENST00000378526 DDX60LQ5H9U9 1706 aaKnown RBP7.32□□□□□ -1.24
LIG3-202ENST00000378526 NYNRINQ9P2P1 1898 aaKnown RBP7.32□□□□□ -1.24
LIG3-202ENST00000378526 G3V4G9 280 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 TMEM167AQ8TBQ9 72 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 ZDBF2Q9HCK1 2354 aa7.32□□□□□ -1.24
LIG3-202ENST00000378526 EFNB3Q15768 340 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 FAM166AQ6J272 317 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 ZNF721Q8TF20 911 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 TMEM158Q8WZ71 300 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 A0A1B0GTL3 188 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 SHISA8B8ZZ34 492 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 LMO7DNF2Z398 122 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 NDUFC1O43677 76 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 TEN1Q86WV5 123 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 C8orf31Q8N9H6 132 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 RPL34P49207 117 aaKnown RBP7.31□□□□□ -1.24
LIG3-202ENST00000378526 WFDC12Q8WWY7 111 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 HCSTQ9UBK5 93 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 PTPRZ1P23471 2315 aaPredicted RBP7.31□□□□□ -1.24
LIG3-202ENST00000378526 C17orf99Q6UX52 265 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 WFDC11Q8NEX6 87 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 SIT1Q9Y3P8 196 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 TRBV5-3A0A0A0MS03 114 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 MRPL23Q16540 153 aaKnown RBP7.31□□□□□ -1.24
LIG3-202ENST00000378526 LGALS9BQ3B8N2 356 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 LGALS9CQ6DKI2 356 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 Q71RC1 249 aaPredicted RBP7.31□□□□□ -1.24
LIG3-202ENST00000378526 DMRTC2Q8IXT2 367 aaPredicted RBP7.31□□□□□ -1.24
LIG3-202ENST00000378526 SS18Q15532 418 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 C8orf46Q8TAG6 207 aa7.31□□□□□ -1.24
LIG3-202ENST00000378526 LOC102723996A0A087X1L8 192 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 TMEM14DPA8MWL7 114 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 OVOL1O14753 267 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 CRLF1O75462 422 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 IGLV3-27P01718 113 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 RTBDNQ9BSG5 229 aaPredicted RBP7.3□□□□□ -1.24
LIG3-202ENST00000378526 ORMDL1Q9P0S3 153 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 R3HDMLQ9H3Y0 253 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 C21orf62Q9NYP8 219 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 FUSP35637 526 aaKnown RBP eCLIP7.3□□□□□ -1.24
LIG3-202ENST00000378526 C8orf86Q6ZUL3 223 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 NPIPB5A8MRT5 1133 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 RNASE2P10153 161 aaKnown RBP7.3□□□□□ -1.24
LIG3-202ENST00000378526 GLMPQ8WWB7 406 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 SCARF2Q96GP6 870 aaPredicted RBP7.3□□□□□ -1.24
LIG3-202ENST00000378526 TNCP24821 2201 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 PRSS29PA6NIE9 313 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 PRB4P10163 310 aaPredicted RBP7.3□□□□□ -1.24
LIG3-202ENST00000378526 FOXI2Q6ZQN5 318 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 SRSF8Q9BRL6 282 aaKnown RBP7.3□□□□□ -1.24
LIG3-202ENST00000378526 FOXC1Q12948 553 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 CTHRC1Q96CG8 243 aa7.3□□□□□ -1.24
LIG3-202ENST00000378526 TMEM131Q92545 1883 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms