RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 LINC00052Q96N35 136 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 TP53RKQ96S44 253 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 NACAE9PAV3 2078 aa9.77□□□□□ -0.85
VPS29-201ENST00000360579 C3orf85A0A1B0GTC6 90 aa9.76□□□□□ -0.85
VPS29-201ENST00000360579 TOMM40O96008 361 aa9.76□□□□□ -0.85
VPS29-201ENST00000360579 PIGPP57054 158 aa9.76□□□□□ -0.85
VPS29-201ENST00000360579 PSG9Q00887 426 aa9.76□□□□□ -0.85
VPS29-201ENST00000360579 C2orf83Q53S99 150 aa9.76□□□□□ -0.85
VPS29-201ENST00000360579 HEYLQ9NQ87 328 aaPredicted RBP9.76□□□□□ -0.85
VPS29-201ENST00000360579 SMIM31A0A1B0GVY4 71 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 B3GALNT1O75752 331 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 RORCP51449 518 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 CCL18P55774 89 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 ZNF79Q15937 498 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 AARDQ4LEZ3 155 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 SAMD13Q5VXD3 122 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 EBLN2Q6P2I7 272 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 SPATA12Q7Z6I5 190 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 NOXA1Q86UR1 476 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 FAM219AQ8IW50 185 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 C1orf158Q8N1D5 194 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 MAGT1Q9H0U3 335 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.75□□□□□ -0.85
VPS29-201ENST00000360579 KLK11Q9UBX7 282 aa9.75□□□□□ -0.85
VPS29-201ENST00000360579 LYRM9A8MSI8 78 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 ANKRD65E5RJM6 399 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 PI3P19957 117 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 PAX9P55771 341 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 OR8G2PQ6IF36 304 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 CCDC71LQ8N9Z2 235 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 SLC24A4Q8NFF2 622 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 OR51G1Q8NGK1 321 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 NPIPB3Q92617 1050 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 RNF125Q96EQ8 232 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 TMEM208Q9BTX3 173 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 SLC35B3Q9H1N7 401 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 COPZ2Q9P299 210 aa9.74□□□□□ -0.85
VPS29-201ENST00000360579 DMBT1Q9UGM3 2413 aaPredicted RBP9.74□□□□□ -0.85
VPS29-201ENST00000360579 PSG1P11464 419 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 UCP1P25874 307 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 DEFB1P60022 68 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 C1orf194Q5T5A4 169 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 FAM78BQ5VT40 261 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 ARRDC1Q8N5I2 433 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 ACY3Q96HD9 319 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 WDR12Q9GZL7 423 aaKnown RBP9.73□□□□□ -0.85
VPS29-201ENST00000360579 CACFD1Q9UGQ2 172 aa9.73□□□□□ -0.85
VPS29-201ENST00000360579 A0A0G2JRQ6 117 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 M0QYG6 137 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 ISLRO14498 428 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 NUDT3O95989 172 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 SP6Q3SY56 376 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 RNASE10Q5GAN6 216 aaKnown RBP9.72□□□□□ -0.85
VPS29-201ENST00000360579 LHFPL1Q86WI0 220 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 SNX29P2Q8IUI4 249 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 ZFAND1Q8TCF1 268 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 IGF2BP2-AS1Q96M15 143 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 PBDC1Q9BVG4 233 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 Q9H521 79 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 RPRMQ9NS64 109 aa9.72□□□□□ -0.85
VPS29-201ENST00000360579 A0A0J9YX75 114 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 CEBPZOSA8MTT3 80 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 SOCS3O14543 225 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 APOA1P02647 267 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 RPS19P39019 145 aaKnown RBP9.71□□□□□ -0.86
VPS29-201ENST00000360579 B2MP61769 119 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 SUPT4H1P63272 117 aaKnown RBP9.71□□□□□ -0.86
VPS29-201ENST00000360579 TTC32Q5I0X7 151 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 ABHD1Q96SE0 405 aa9.71□□□□□ -0.86
VPS29-201ENST00000360579 EPM2AB3EWF7 344 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 F5H768 121 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 NXPH3O95157 252 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 CDS2O95674 445 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 FABP1P07148 127 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 DEFB130BP0DP73 79 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 DEFB130AP0DP74 79 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 TBPP20226 339 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 MEOX2P50222 304 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 KLF9Q13886 244 aaPredicted RBP9.7□□□□□ -0.86
VPS29-201ENST00000360579 NEDD8Q15843 81 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 OR4C16Q8NGL9 310 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 GPR146Q96CH1 333 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 TMEM222Q9H0R3 208 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 DOK5Q9P104 306 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 LINC00588Q9Y4M8 146 aa9.7□□□□□ -0.86
VPS29-201ENST00000360579 F6UB75 175 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 INSP01308 110 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 ATP5G1P05496 136 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 BTF3P20290 206 aaKnown RBP9.69□□□□□ -0.86
VPS29-201ENST00000360579 TSPOP30536 169 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 ATP5G3P48201 142 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 CLINT1Q14677 625 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 OR8I2Q8N0Y5 310 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 TMEM170AQ8WVE7 144 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 RBPMSQ93062 196 aaKnown RBP9.69□□□□□ -0.86
VPS29-201ENST00000360579 COMMD3Q9UBI1 195 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 CACNG5Q9UF02 275 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 U3KQ87 197 aa9.69□□□□□ -0.86
VPS29-201ENST00000360579 ZFP92A6NM28 416 aa9.68□□□□□ -0.86
VPS29-201ENST00000360579 A8MTW9 85 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms