RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CHODLQ9H9P2 273 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 TNFRSF19Q9NS68 423 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 TRAV8-1A0A0A6YYK1 113 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 ITGB1BP1O14713 200 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 TNFRSF1AP19438 455 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 BPIFB3P59826 476 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 RNF151Q2KHN1 245 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 IGFL2Q6UWQ7 119 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 Q8N976 141 aa9.79□□□□□ -0.84
CLIP3-201ENST00000360535 PPIAL4EA0A075B759 164 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 A0A1W2PRD5 423 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 A0A1W2PRF3 423 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 A0A1W2PRM7 423 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 PPIAL4DF5H284 164 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 LYNX1G3V0Z9 82 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 NDUFB3O43676 98 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 FCN3O75636 299 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 PPIAL4FP0DN26 164 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 LYNX1P0DP58 116 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 ESDP10768 282 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 BSPH1Q075Z2 132 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 OR10J3Q5JRS4 329 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 TMEM108Q6UXF1 575 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 A0A1W2PPI3 338 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 HYPMO75409 117 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 GATA4P43694 442 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 SUB1P53999 127 aaKnown RBP eCLIP9.78□□□□□ -0.84
CLIP3-201ENST00000360535 STPG4Q8N801 248 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 TCRBV4S1A1TA0A5B7 111 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 CGB1A6NKQ9 187 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 TM4SF5O14894 197 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 KLK10O43240 276 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 CSN3P07498 182 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF841Q6ZN19 808 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 OR1L4Q8NGR5 311 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 TPPP3Q9BW30 176 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 DYNLRB1Q9NP97 96 aa9.78□□□□□ -0.84
CLIP3-201ENST00000360535 C17orf100A8MU93 164 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF138P52744 262 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 PRRX1P54821 245 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 ZNF833PQ6ZTB9 187 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 MRPL32Q9BYC8 188 aaKnown RBP9.77□□□□□ -0.84
CLIP3-201ENST00000360535 S4R3C0 116 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 COL6A6A6NMZ7 2263 aa9.77□□□□□ -0.84
CLIP3-201ENST00000360535 COX7A1P24310 79 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 LYZP61626 148 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 ADIPOQQ15848 244 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 COL5A1-AS1Q5SY13 56 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 LINC00322Q6ZN03 302 aaPredicted RBP9.77□□□□□ -0.85
CLIP3-201ENST00000360535 Q71RC1 249 aaPredicted RBP9.77□□□□□ -0.85
CLIP3-201ENST00000360535 CACNG8Q8WXS5 425 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 FXYD5Q96DB9 178 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 OR8B2Q96RD0 313 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 C19orf24Q9BVV8 132 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 IGKV1D-37A0A075B6S9 117 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 VWC2LB2RUY7 222 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 NBEAP1P0C6P0 100 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 LRRC10Q5BKY1 277 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 DAZAP1Q96EP5 407 aaKnown RBP9.77□□□□□ -0.85
CLIP3-201ENST00000360535 UQCR10Q9UDW1 63 aa9.77□□□□□ -0.85
CLIP3-201ENST00000360535 C22orf46C9J442 243 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 FNDC10F2Z333 226 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 PLGLAQ15195 96 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 VMA21Q3ZAQ7 101 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 FAM169BQ8N8A8 192 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 OR5AN1Q8NGI8 311 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 WASHC3Q9Y3C0 194 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 MUC6Q6W4X9 2439 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 SVEP1Q4LDE5 3571 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 PSMB11A5LHX3 300 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 IGLC2P0DOY2 106 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 IGLC3P0DOY3 106 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 TMEM177Q53S58 311 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 EBLN2Q6P2I7 272 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 GRAMD2BQ96HH9 432 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 EPDR1Q9UM22 224 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 ARL2-SNX15V9GYD0 113 aa9.76□□□□□ -0.85
CLIP3-201ENST00000360535 C16orf97H3BN30 126 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 RBP4P02753 201 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 HIST1H1EP10412 219 aaKnown RBP9.75□□□□□ -0.85
CLIP3-201ENST00000360535 PMCHL2Q9BQD1 86 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 CTSZQ9UBR2 303 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 LAMTOR2Q9Y2Q5 125 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 UNQ5815/PRO19632Q6UWF5 114 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 LINC00173Q6ZV60 143 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 EXOC3-AS1Q8N2X6 119 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 VSTM2AQ8TAG5 236 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 ZNF292O60281 2723 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 PRNTQ86SH4 94 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 CIARTQ8N365 385 aaPredicted RBP9.75□□□□□ -0.85
CLIP3-201ENST00000360535 TMEM167AQ8TBQ9 72 aa9.75□□□□□ -0.85
CLIP3-201ENST00000360535 FAM181BA6NEQ2 426 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 P01737 135 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 PTTG1IPP53801 180 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 PERPQ96FX8 193 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 ASH1LQ9NR48 2969 aaKnown RBP9.74□□□□□ -0.85
CLIP3-201ENST00000360535 A0A0G2JNJ9 132 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 TCTAP57738 103 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 COX19Q49B96 90 aa9.74□□□□□ -0.85
CLIP3-201ENST00000360535 C22orf15Q8WYQ4 148 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms