RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PSG1P11464 419 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 ADMP35318 185 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 TPPP2P59282 170 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 SLC35B1P78383 322 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 Q56UQ5 140 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 OR51G1Q8NGK1 321 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 TMEM37Q8WXS4 190 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF414Q96IQ9 312 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 SCRT1Q9BWW7 348 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 DNAJC4Q9NNZ3 241 aa11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 SETXQ7Z333 2677 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-202ENST00000334448 A0A1W2PPV4 95 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 WI2-2373I1.2A0A1W2PRP0 233 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 NUPL2O15504 423 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 NDUFS6O75380 124 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 RAB9AP51151 201 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF343Q6P1L6 599 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 TEX38Q6PEX7 206 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 PATE2Q6UY27 113 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 Q6ZSV7 163 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 WIPF2Q8TF74 440 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 FAM210AQ96ND0 272 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 MS4A10Q96PG2 267 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 DUX5Q96PT3 197 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 SMDT1Q9H4I9 107 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 GSX1Q9H4S2 264 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 C16orf95Q9H693 158 aa11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 SEPSECSQ9HD40 501 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-202ENST00000334448 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 INAFM1C9JVW0 142 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 TGOLN2O43493 480 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 COX7A2P2O60397 106 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 HYPMO75409 117 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 NDUFA7O95182 113 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 CD5P06127 495 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 PF4V1P10720 104 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 TAGLN2P37802 199 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 CCL20P78556 96 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 DEFA5Q01523 94 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 KIAA0141Q14154 515 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 FAM78BQ5VT40 261 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 C10orf113Q5VZT2 155 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 LCN15Q6UWW0 184 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF600Q6ZNG1 722 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF491Q8N8L2 437 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 CHRDL1Q9BU40 450 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 KLK15Q9H2R5 256 aa11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 MRPL27Q9P0M9 148 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-202ENST00000334448 OR2T8A6NH00 312 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 CRLF1O75462 422 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 CXorf1O96002 111 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 CLEC3BP05452 202 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 GPR183P32249 361 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 PSMB3P49720 205 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 PPT1P50897 306 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 TAS2R45P59539 299 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 PQLC2Q6ZP29 291 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 SUN5Q8TC36 379 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 Q8WTZ3 238 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 FAM167A-AS1Q96KT0 104 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 PBDC1Q9BVG4 233 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 TECRQ9NZ01 308 aaKnown RBP11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 S4R3C0 116 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 ARL2-SNX15V9GYD0 113 aa11.55□□□□□ -0.56
CCDC88C-202ENST00000334448 C8orf88P0DMB2 117 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 KHDC3LQ587J8 217 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 SPATA31B1PQ5VZV4 182 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 MIR17HGQ75NE6 70 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 S100A7AQ86SG5 101 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 STXBP6Q8NFX7 210 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 RNF125Q96EQ8 232 aa11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 FN1P02751 2386 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-202ENST00000334448 IFNA1P01562 189 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 IGHV3-23P01764 117 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 ARL14EPLP0DKL9 152 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 BCL2P10415 239 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 S100A1P23297 94 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 FGF8P55075 233 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 RELQ04864 619 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 GUK1Q16774 197 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 CLEC19AQ6UXS0 136 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 ZNF329Q86UD4 541 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 OR1B1Q8NGR6 318 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 WFDC12Q8WWY7 111 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 UBE2E2Q96LR5 201 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 ZFAND3Q9H8U3 227 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 MANBALQ9NQG1 85 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 HIGD1AQ9Y241 93 aa11.53□□□□□ -0.56
CCDC88C-202ENST00000334448 F8P00451 2351 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 LOC102723971A0A1B0GUV8 181 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 H3BRN7 92 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 IL4P05112 153 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 ORM2P19652 201 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 GCHFRP30047 84 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 LYZP61626 148 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 USF2Q15853 346 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 LINC00305Q7Z4B0 112 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 ZNF503Q96F45 646 aa11.52□□□□□ -0.57
CCDC88C-202ENST00000334448 SHANK2-AS3Q9BTD1 123 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms