RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SCN2AQ99250 2005 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 IGHV1OR15-9A0A0B4J2B8 117 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 PAX4O43316 350 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 YPEL1O60688 119 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 RPL27AP46776 148 aaKnown RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 FAM214BQ7L5A3 538 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 FGFRL1Q8N441 504 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 YPEL2Q96QA6 119 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 FOXA2Q9Y261 457 aaPredicted RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 IGKV1D-43A0A0B4J1Z2 117 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 SCO2A0A1W2PP80 73 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 TIAF1O95411 115 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 C1QL2Q7Z5L3 287 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 CHCHD2Q9Y6H1 151 aaPredicted RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 NUP210Q8TEM1 1887 aaPredicted RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 GFRA3O60609 400 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 ZNF146Q15072 292 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 MRPL14Q6P1L8 145 aaKnown RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 PPP1R27Q86WC6 154 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 PIP4P2Q8N4L2 257 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 PRADC1Q9BSG0 188 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 IGHV3-66A0A0C4DH42 116 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 GAGE12HA6NDE8 117 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 GUSBP1Q15486 140 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 TMEM74BQ9NUR3 256 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 ARID1AO14497 2285 aa5.35□□□□□ -1.55
VPS35-201ENST00000299138 HELZP42694 1942 aaKnown RBP5.35□□□□□ -1.55
VPS35-201ENST00000299138 ZNHIT1O43257 154 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 TIMP3P35625 211 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 ORMDL3Q8N138 153 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 TMEM86BQ8N661 226 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 GPHA2Q96T91 129 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 DLL3Q9NYJ7 618 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 KNTC1P50748 2209 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 IGKV1D-8A0A087WSZ0 117 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 IGHV3-72A0A0B4J1Y9 119 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 RPL15P61313 204 aaKnown RBP5.34□□□□□ -1.55
VPS35-201ENST00000299138 PRR31Q5SQ13 230 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 RPP25LQ8N5L8 163 aaKnown RBP5.34□□□□□ -1.55
VPS35-201ENST00000299138 DNAJC30Q96LL9 226 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 CHKB-CPT1BH3BT56 60 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 UPK2O00526 184 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 WNT9BO14905 357 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 C8orf88P0DMB2 117 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 C1orf162Q8NEQ5 155 aaPredicted RBP5.34□□□□□ -1.55
VPS35-201ENST00000299138 CLEC7AQ9BXN2 247 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 SCN5AQ14524 2016 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 A0A087WV48 116 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 NDUFS5O43920 106 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 IL18BPO95998 194 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 CELA3AP09093 270 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 Q71RC1 249 aaPredicted RBP5.34□□□□□ -1.55
VPS35-201ENST00000299138 CXXC4Q9H2H0 198 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 ZNF319Q9P2F9 582 aa5.34□□□□□ -1.55
VPS35-201ENST00000299138 A0A1B0GUT8 65 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 F8WEM9 126 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 EREGO14944 169 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 IMMP1LQ96LU5 166 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 TMEM243Q9BU79 118 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 SNHG12Q9BXW3 62 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 CACNA1CQ13936 2221 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 HIGD1CA8MV81 97 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 PAX9P55771 341 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 TCF15Q12870 199 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 TPRX1Q8N7U7 411 aa5.34□□□□□ -1.56
VPS35-201ENST00000299138 MUC22E2RYF6 1773 aaPredicted RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 IFI27P40305 119 aaPredicted RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 SYNJ2BPP57105 145 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 FXYD7P58549 80 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 IZUMO1RA6ND01 250 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 AHRRA9YTQ3 701 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 J3KT08 172 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 SOCS3O14543 225 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 HTN3P15516 51 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 GCHFRP30047 84 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 EEF1AKMT3Q96AZ1 226 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 RNASE7Q9H1E1 156 aaKnown RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 PLA2G2EQ9NZK7 142 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 HEATR5BQ9P2D3 2071 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 IGHV3-35A0A0C4DH35 117 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 ASCC3Q8N3C0 2202 aaKnown RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 MYO7AQ13402 2215 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 IGHV3OR16-13A0A075B7E8 117 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 IGHV3-74A0A0B4J1X5 117 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 CD28P10747 220 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 CRYBA4P53673 196 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 DEFB123Q8N688 67 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 ZNF488Q96MN9 340 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 R4GN57 208 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 CGAP01215 116 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 RNASE4P34096 147 aaKnown RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 RPL31P62899 125 aaKnown RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 ZNF497Q6ZNH5 498 aa5.33□□□□□ -1.56
VPS35-201ENST00000299138 RPP21Q9H633 154 aaKnown RBP5.33□□□□□ -1.56
VPS35-201ENST00000299138 K7EP13 123 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 RPL8P62917 257 aaKnown RBP5.32□□□□□ -1.56
VPS35-201ENST00000299138 PCOLCEQ15113 449 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 GFRA4Q9GZZ7 299 aa5.32□□□□□ -1.56
VPS35-201ENST00000299138 MORN2Q502X0 79 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms