RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 PSG1P11464 419 aa15.13■□□□□ 0.01
YBX3-201ENST00000228251 PDLIM4P50479 330 aa15.13■□□□□ 0.01
YBX3-201ENST00000228251 NDPQ00604 133 aa15.13■□□□□ 0.01
YBX3-201ENST00000228251 GAR1Q9NY12 217 aaKnown RBP15.13■□□□□ 0.01
YBX3-201ENST00000228251 ABCA2Q9BZC7 2435 aa15.13■□□□□ 0.01
YBX3-201ENST00000228251 A0A0U1RQK1 487 aa15.12■□□□□ 0.01
YBX3-201ENST00000228251 ZNF320A2RRD8 509 aa15.12■□□□□ 0.01
YBX3-201ENST00000228251 SLC17A3O00476 420 aa15.12■□□□□ 0.01
YBX3-201ENST00000228251 FANCD2OSQ96PS1 177 aa15.12■□□□□ 0.01
YBX3-201ENST00000228251 FAM103A1Q9BTL3 118 aaKnown RBP15.12■□□□□ 0.01
YBX3-201ENST00000228251 PEX7O00628 323 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 ISLRO14498 428 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 UBE2E1P51965 193 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 YPEL3P61236 119 aaPredicted RBP15.11■□□□□ 0.01
YBX3-201ENST00000228251 CX3CL1P78423 397 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 TIGITQ495A1 244 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 MRPL27Q9P0M9 148 aaKnown RBP15.11■□□□□ 0.01
YBX3-201ENST00000228251 POLR3KQ9Y2Y1 108 aaPredicted RBP15.11■□□□□ 0.01
YBX3-201ENST00000228251 IGLV11-55A0A075B6I3 123 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 IGHV4-39P01824 125 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 HES1Q14469 280 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 TMEM183AQ8IXX5 376 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 LINC00479Q96M42 142 aa15.11■□□□□ 0.01
YBX3-201ENST00000228251 MED13LQ71F56 2210 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 TOX4O94842 621 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 GOSR1O95249 250 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 TTC9CQ8N5M4 171 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 ARPC1AQ92747 370 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 ZNF48Q96MX3 618 aaPredicted RBP15.1■□□□□ 0.01
YBX3-201ENST00000228251 TMEM14CQ9P0S9 112 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 HIGD1AQ9Y241 93 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 KLF12Q9Y4X4 402 aa15.1■□□□□ 0.01
YBX3-201ENST00000228251 NBEAP1P0C6P0 100 aa15.09■□□□□ 0.01
YBX3-201ENST00000228251 EGR2P11161 476 aaPredicted RBP15.09■□□□□ 0.01
YBX3-201ENST00000228251 ERVFC1-1P60608 527 aa15.09■□□□□ 0.01
YBX3-201ENST00000228251 PYY3Q5JQD4 70 aa15.09■□□□□ 0.01
YBX3-201ENST00000228251 AKAP6Q13023 2319 aa15.09■□□□□ 0.01
YBX3-201ENST00000228251 PCP4L1A6NKN8 68 aa15.08■□□□□ 0.01
YBX3-201ENST00000228251 F8W735 103 aaPredicted RBP15.08■□□□□ 0.01
YBX3-201ENST00000228251 CNN1P51911 297 aaKnown RBP15.08■□□□□ 0.01
YBX3-201ENST00000228251 S100A12P80511 92 aa15.08■□□□□ 0.01
YBX3-201ENST00000228251 RASL11BQ9BPW5 248 aa15.08■□□□□ 0.01
YBX3-201ENST00000228251 RNASE7Q9H1E1 156 aaKnown RBP15.08■□□□□ 0.01
YBX3-201ENST00000228251 C7orf69Q9H7B7 122 aa15.08■□□□□ 0.01
YBX3-201ENST00000228251 EPDR1Q9UM22 224 aa15.08■□□□□ 0.01
YBX3-201ENST00000228251 S100A2P29034 98 aa15.08■□□□□ 0
YBX3-201ENST00000228251 KLF17Q5JT82 389 aaPredicted RBP15.08■□□□□ 0
YBX3-201ENST00000228251 Q8N9W7 124 aa15.08■□□□□ 0
YBX3-201ENST00000228251 RBM14Q96PK6 669 aaKnown RBP15.08■□□□□ 0
YBX3-201ENST00000228251 HIST1H2BLQ99880 126 aa15.08■□□□□ 0
YBX3-201ENST00000228251 SLC25A39Q9BZJ4 359 aaPredicted RBP15.08■□□□□ 0
YBX3-201ENST00000228251 TOMM40O96008 361 aa15.07■□□□□ 0
YBX3-201ENST00000228251 LYZP61626 148 aa15.07■□□□□ 0
YBX3-201ENST00000228251 RANP62826 216 aaKnown RBP15.07■□□□□ 0
YBX3-201ENST00000228251 TMEM183BQ1AE95 376 aa15.07■□□□□ 0
YBX3-201ENST00000228251 RPEL1Q2QD12 228 aa15.07■□□□□ 0
YBX3-201ENST00000228251 LEMD1Q68G75 181 aa15.07■□□□□ 0
YBX3-201ENST00000228251 ZNF600Q6ZNG1 722 aa15.07■□□□□ 0
YBX3-201ENST00000228251 TRAPPC1Q9Y5R8 145 aa15.07■□□□□ 0
YBX3-201ENST00000228251 DOPEY1Q5JWR5 2465 aa15.06■□□□□ 0
YBX3-201ENST00000228251 IGHV7-81A0A0B4J1V7 117 aa15.06■□□□□ 0
YBX3-201ENST00000228251 XKRY2A2RUG3 117 aa15.06■□□□□ 0
YBX3-201ENST00000228251 RD3LP0DJH9 198 aa15.06■□□□□ 0
YBX3-201ENST00000228251 TMEM11P17152 192 aa15.06■□□□□ 0
YBX3-201ENST00000228251 GNG5P63218 68 aa15.06■□□□□ 0
YBX3-201ENST00000228251 KLK9Q2XQG4 91 aa15.06■□□□□ 0
YBX3-201ENST00000228251 PDZD11Q5EBL8 140 aa15.06■□□□□ 0
YBX3-201ENST00000228251 FAM231DQ6ZW35 169 aa15.06■□□□□ 0
YBX3-201ENST00000228251 OR10D4PQ8NGN7 298 aa15.06■□□□□ 0
YBX3-201ENST00000228251 NIT2Q9NQR4 276 aa15.06■□□□□ 0
YBX3-201ENST00000228251 KLK9Q9UKQ9 250 aa15.06■□□□□ 0
YBX3-201ENST00000228251 ACACBO00763 2458 aa15.06■□□□□ 0
YBX3-201ENST00000228251 WI2-2373I1.2A0A1W2PRP0 233 aa15.06■□□□□ 0
YBX3-201ENST00000228251 HLA-DRB1P01911 266 aa15.06■□□□□ 0
YBX3-201ENST00000228251 SNRPCP09234 159 aaKnown RBP15.06■□□□□ 0
YBX3-201ENST00000228251 FAM120AOSQ5T036 256 aa15.06■□□□□ 0
YBX3-201ENST00000228251 ZNF491Q8N8L2 437 aa15.06■□□□□ 0
YBX3-201ENST00000228251 MBD6Q96DN6 1003 aa15.06■□□□□ 0
YBX3-201ENST00000228251 SHANK2-AS3Q9BTD1 123 aa15.06■□□□□ 0
YBX3-201ENST00000228251 FLNCQ14315 2725 aa15.05■□□□□ -0
YBX3-201ENST00000228251 TRAV34A0A0B4J273 112 aa15.05■□□□□ -0
YBX3-201ENST00000228251 SMIM27A0A1W2PRY6 76 aa15.05■□□□□ -0
YBX3-201ENST00000228251 H3BRN7 92 aa15.05■□□□□ -0
YBX3-201ENST00000228251 FABP1P07148 127 aa15.05■□□□□ -0
YBX3-201ENST00000228251 HIST1H1BP16401 226 aaKnown RBP15.05■□□□□ -0
YBX3-201ENST00000228251 SAA4P35542 130 aa15.05■□□□□ -0
YBX3-201ENST00000228251 C5orf17Q8NAS9 161 aa15.05■□□□□ -0
YBX3-201ENST00000228251 BLNKQ8WV28 456 aa15.05■□□□□ -0
YBX3-201ENST00000228251 PGPA6NDG6 321 aa15.04■□□□□ -0
YBX3-201ENST00000228251 NCBP2LA6PVI3 153 aaKnown RBP15.04■□□□□ -0
YBX3-201ENST00000228251 FRMD6-AS1P0C7T7 363 aa15.04■□□□□ -0
YBX3-201ENST00000228251 IBA57Q5T440 356 aaKnown RBP15.04■□□□□ -0
YBX3-201ENST00000228251 SMIM12Q96EX1 92 aa15.04■□□□□ -0
YBX3-201ENST00000228251 MLST8Q9BVC4 326 aa15.04■□□□□ -0
YBX3-201ENST00000228251 ZNF586Q9NXT0 402 aa15.04■□□□□ -0
YBX3-201ENST00000228251 MRPS12O15235 138 aaKnown RBP15.03■□□□□ -0
YBX3-201ENST00000228251 AMBPP02760 352 aa15.03■□□□□ -0
YBX3-201ENST00000228251 SLC25A5P05141 298 aaKnown RBP15.03■□□□□ -0
YBX3-201ENST00000228251 FAM106CPP0CH98 169 aa15.03■□□□□ -0
YBX3-201ENST00000228251 HIST1H1EP10412 219 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms