RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ATG12O94817 140 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 CD74P04233 296 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 OR10J1P30954 320 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 RCVRNP35243 200 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 UCP3P55916 312 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 DHODHQ02127 395 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 SP6Q3SY56 376 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 FAM222AQ5U5X8 452 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 SIGLEC15Q6ZMC9 328 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 Q6ZR54 194 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 OR1S2Q8NGQ3 325 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 GPX8Q8TED1 209 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 RRNAD1Q96FB5 475 aaKnown RBP10.71□□□□□ -0.69
SYNE2-228ENST00000639659 LINC00052Q96N35 136 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 Q9H521 79 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 NRN1Q9NPD7 142 aa10.71□□□□□ -0.69
SYNE2-228ENST00000639659 A0A0G2JRQ6 117 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 C3orf85A0A1B0GTC6 90 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 SMIM31A0A1B0GVY4 71 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 TMEM189A5PLL7 270 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 INS-IGF2F8WCM5 200 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 TMEM127O75204 238 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 HLA-DRB4P13762 266 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 RPS19P39019 145 aaKnown RBP10.7□□□□□ -0.7
SYNE2-228ENST00000639659 USF2Q15853 346 aaPredicted RBP10.7□□□□□ -0.7
SYNE2-228ENST00000639659 GDF5OSQ5U4N7 250 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 NIPSNAP3BQ9BS92 247 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 COMMD3Q9UBI1 195 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 RFNGQ9Y644 331 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 U3KQE9 123 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 HLA-DRB4X5D2U9 266 aa10.7□□□□□ -0.7
SYNE2-228ENST00000639659 NXPH3O95157 252 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 P0C879 139 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 IGLC1P0CG04 106 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 RPL5P46777 297 aaKnown RBP10.69□□□□□ -0.7
SYNE2-228ENST00000639659 GSG1LQ6UXU4 331 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 ZNF705AQ6ZN79 300 aaPredicted RBP10.69□□□□□ -0.7
SYNE2-228ENST00000639659 MAPKAPK5-AS1Q8N8E1 139 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 OR4B1Q8NGF8 309 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 ACY3Q96HD9 319 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 C7orf50Q9BRJ6 194 aaKnown RBP10.69□□□□□ -0.7
SYNE2-228ENST00000639659 PBDC1Q9BVG4 233 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 HEYLQ9NQ87 328 aaPredicted RBP10.69□□□□□ -0.7
SYNE2-228ENST00000639659 COPZ2Q9P299 210 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 TMED3Q9Y3Q3 217 aa10.69□□□□□ -0.7
SYNE2-228ENST00000639659 CEBPZOSA8MTT3 80 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 ZNF705FA8MVS1 300 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-228ENST00000639659 ZNF705DP0CH99 300 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-228ENST00000639659 ZNF705BP0CI00 300 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-228ENST00000639659 HTR2BP41595 481 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 RND3P61587 244 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 RNASE10Q5GAN6 216 aaKnown RBP10.68□□□□□ -0.7
SYNE2-228ENST00000639659 PRSS54Q6PEW0 395 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 TMEM88Q6PEY1 159 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 COQ8AQ8NI60 647 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 NEU1Q99519 415 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 ATG101Q9BSB4 218 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 YTHDF1Q9BYJ9 559 aaKnown RBP10.68□□□□□ -0.7
SYNE2-228ENST00000639659 SCPEP1Q9HB40 452 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 DKK2Q9UBU2 259 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 NACAE9PAV3 2078 aa10.68□□□□□ -0.7
SYNE2-228ENST00000639659 TEX48A0A1B0GUV7 120 aa10.67□□□□□ -0.7
SYNE2-228ENST00000639659 GSTZ1O43708 216 aaPredicted RBP10.67□□□□□ -0.7
SYNE2-228ENST00000639659 SLC25A4P12235 298 aa10.67□□□□□ -0.7
SYNE2-228ENST00000639659 OR51G1Q8NGK1 321 aa10.67□□□□□ -0.7
SYNE2-228ENST00000639659 NPIPB3Q92617 1050 aa10.67□□□□□ -0.7
SYNE2-228ENST00000639659 ZNF486Q96H40 463 aaPredicted RBP10.67□□□□□ -0.7
SYNE2-228ENST00000639659 FAM210BQ96KR6 192 aa10.67□□□□□ -0.7
SYNE2-228ENST00000639659 YTHDF2Q9Y5A9 579 aaKnown RBP10.67□□□□□ -0.7
SYNE2-228ENST00000639659 LOC102723971A0A1B0GUV8 181 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 SMIM9A6NGZ8 99 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 HBE1P02100 147 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 RD3LP0DJH9 198 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 NKX2-1P43699 371 aaPredicted RBP10.66□□□□□ -0.7
SYNE2-228ENST00000639659 SPCS3P61009 180 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 YPEL3P61236 119 aaPredicted RBP10.66□□□□□ -0.7
SYNE2-228ENST00000639659 DAD1P61803 113 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 TNP2Q05952 138 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 BSXQ3C1V8 233 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 RNF212Q495C1 297 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 SCGB2B2Q4G0G5 96 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 CCDC71LQ8N9Z2 235 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 SLC24A4Q8NFF2 622 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 SLC35B3Q9H1N7 401 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 GOLT1BQ9Y3E0 138 aa10.66□□□□□ -0.7
SYNE2-228ENST00000639659 FAM25AB3EWG3 89 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 FAM25CB3EWG5 89 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 FAM25GB3EWG6 89 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 BUB3O43684 328 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 TOMM40O96008 361 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 WDR12Q9GZL7 423 aaKnown RBP10.65□□□□□ -0.7
SYNE2-228ENST00000639659 CACNG5Q9UF02 275 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 HSPG2P98160 4391 aa10.65□□□□□ -0.7
SYNE2-228ENST00000639659 HPGDSO60760 199 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 APOA1P02647 267 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 CD3DP04234 171 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 ID1P41134 155 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 RORCP51449 518 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 C2orf83Q53S99 150 aa10.64□□□□□ -0.71
SYNE2-228ENST00000639659 ETFRF1Q6IPR1 90 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms