RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SCTP09683 121 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 FAM53BQ14153 422 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 DEFB110Q30KQ9 67 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 SFTPA2Q8IWL1 248 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 SFTPA1Q8IWL2 248 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 SNRNP40Q96DI7 357 aaKnown RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF799Q96GE5 643 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 MGST2Q99735 147 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 RPP21Q9H633 154 aaKnown RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 DEPPQ9NTK1 212 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 IDI2-AS1Q9NZ38 188 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 AMMECR1Q9Y4X0 333 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 KIAA2026Q5HYC2 2103 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 H3BML4 177 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 IGKCP01834 107 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 CA6P23280 308 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 SLC25A53Q5H9E4 307 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 ADAMTSL4Q6UY14 1074 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 WFDC5Q8TCV5 224 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 CACNA1DQ01668 2161 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 A0A1B0GX51 115 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 PRSS38A1L453 326 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 DPM2O94777 84 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 LILRA6Q6PI73 481 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 CBLN3Q6UW01 205 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 PDPNQ86YL7 162 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 C3orf22Q8N5N4 141 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 SMRP1Q8NCR6 262 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 C21orf62Q9NYP8 219 aa4.73□□□□□ -1.65
SCN1A-216ENST00000637968 POLR2AP24928 1970 aaKnown RBP4.73□□□□□ -1.65
SCN1A-216ENST00000637968 IGLC6P0CF74 106 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 MYOD1P15172 320 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 LYPD6Q86Y78 171 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 AMN1Q8IY45 258 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 MYOZ3Q8TDC0 251 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 C1orf147Q96MC9 270 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-216ENST00000637968 CHCHD5Q9BSY4 110 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 RTL8AQ9BWD3 113 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 ARRDC1-AS1Q9H2J1 176 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 TRAV4A0A0B4J268 109 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 TINCRA0A1B0GVN0 87 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 DUSP14O95147 198 aaKnown RBP4.72□□□□□ -1.65
SCN1A-216ENST00000637968 CLDN14O95500 239 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 DIAPH2-AS1Q14236 149 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 HRCT1Q6UXD1 115 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 DTX1Q86Y01 620 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 ANKRD29Q8N6D5 301 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 NXT2Q9NPJ8 142 aaKnown RBP4.72□□□□□ -1.65
SCN1A-216ENST00000637968 E9PLN8 166 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 SLC25A20O43772 301 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 CT62P0C5K7 136 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 RNF144BQ7Z419 303 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 GTSCR1Q86UQ5 136 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 TMEM52Q8NDY8 209 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 C16orf52Q8NHV5 167 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 FAM57AQ8TBR7 257 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 C18orf15Q96N68 181 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 SLC25A10Q9UBX3 287 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-216ENST00000637968 DOCK4Q8N1I0 1966 aa4.72□□□□□ -1.65
SCN1A-216ENST00000637968 SCN3AQ9NY46 2000 aa4.71□□□□□ -1.65
SCN1A-216ENST00000637968 A0A0G2JRQ6 117 aa4.71□□□□□ -1.65
SCN1A-216ENST00000637968 ZNF658BQ4V348 819 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-216ENST00000637968 AICDAQ9GZX7 198 aa4.71□□□□□ -1.65
SCN1A-216ENST00000637968 DENND4CQ5VZ89 1909 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 KIAA1549Q9HCM3 1950 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 FAM236AA0A1B0GUQ0 79 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 FAM236BA0A1B0GV22 79 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 OOEPA6NGQ2 149 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 LINC01549A6NIU2 74 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 J3QLI3 93 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 K7EQS6 105 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 COX7A2P2O60397 106 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 AGFG2O95081 481 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 FOXG1P55316 489 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-216ENST00000637968 TFF2Q03403 129 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM52BQ4KMG9 183 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 CFAP126Q5VTH2 177 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 SIGLEC15Q6ZMC9 328 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 ODF3L1Q8IXM7 274 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 ST8SIA1Q92185 356 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 PROCRQ9UNN8 238 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 TRBV25-1A0A075B6N4 114 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1D-13A0A0B4J2D9 117 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1-9A0A0C4DH69 117 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 MYMXA0A1B0GTQ4 84 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1-13P0DP09 117 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 CDAP32320 146 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 ZNF718Q3SXZ3 478 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 LINC01559Q495D7 138 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 OR11H6Q8NGC7 330 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 FOXC2Q99958 501 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 TCF19Q9Y242 345 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 ATRXP46100 2492 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 A0A1B0GUT8 65 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 H3BMM0 161 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 K7ESF4 209 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 RRHO14718 337 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 NPYP01303 97 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1D-16P01601 117 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 COX6CP09669 75 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms