RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 STRAPQ9Y3F4 350 aaKnown RBP13.79□□□□□ -0.2
CLN3-259ENST00000637551 TRAV14DV4A0A0A6YYC5 116 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 IGHV7-4-1A0A0J9YVY3 117 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 MPTX1A8MV57 137 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 PRSS46E5RG02 174 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 TSPAN4O14817 238 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 PTTG1O95997 202 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 OR10J1P30954 320 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 TOMM20LQ6UXN7 152 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 SLC35E1Q96K37 410 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 C20orf24Q9BUV8 137 aa13.78□□□□□ -0.2
CLN3-259ENST00000637551 PUS1Q9Y606 427 aaKnown RBP eCLIP13.78□□□□□ -0.2
CLN3-259ENST00000637551 IGHV3-35A0A0C4DH35 117 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 A0A1W2PS18 150 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 INMT-MINDY4F8WBC2 141 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 CFDP00746 253 aaPredicted RBP13.77□□□□□ -0.21
CLN3-259ENST00000637551 NHLRC4P0CG21 123 aaPredicted RBP13.77□□□□□ -0.21
CLN3-259ENST00000637551 NUP62P37198 522 aaPredicted RBP13.77□□□□□ -0.21
CLN3-259ENST00000637551 TMEM61Q8N0U2 210 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 Q8N1Y9 231 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 C2orf50Q96LR7 162 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 SEC22CQ9BRL7 303 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 VSIRQ9H7M9 311 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 MRPL36Q9P0J6 103 aaKnown RBP13.77□□□□□ -0.21
CLN3-259ENST00000637551 TENM3Q9P273 2699 aa13.77□□□□□ -0.21
CLN3-259ENST00000637551 ZNF785A8K8V0 405 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 YIF1AO95070 293 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 TOMM40O96008 361 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 IGHV3-48P01763 117 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 IAPPP10997 89 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 CRYBB3P26998 211 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 BTNL8Q6UX41 500 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 GSG1LQ6UXU4 331 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 RBPMS2Q6ZRY4 209 aaKnown RBP13.76□□□□□ -0.21
CLN3-259ENST00000637551 Q8WTZ3 238 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 NARS2Q96I59 477 aaKnown RBP13.76□□□□□ -0.21
CLN3-259ENST00000637551 METTL26Q96S19 204 aa13.76□□□□□ -0.21
CLN3-259ENST00000637551 TRAV2A0A0B4J234 112 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 POLR2GP62487 172 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLN3-259ENST00000637551 GAMTQ14353 236 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 DEFB121Q5J5C9 76 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 TMEM14EPQ6UXP3 125 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 HAPLN4Q86UW8 402 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 THAP8Q8NA92 274 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 NPIPB3Q92617 1050 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 TRGV9Q99603 122 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 GGACTQ9BVM4 153 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 MAGT1Q9H0U3 335 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 PFDN2Q9UHV9 154 aa13.75□□□□□ -0.21
CLN3-259ENST00000637551 RCL1Q9Y2P8 373 aaKnown RBP13.75□□□□□ -0.21
CLN3-259ENST00000637551 CHEK1O14757 476 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 SSSCA1O60232 199 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 MBPP02686 304 aaPredicted RBP13.74□□□□□ -0.21
CLN3-259ENST00000637551 NPPCP23582 126 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 CYCSP99999 105 aaKnown RBP13.74□□□□□ -0.21
CLN3-259ENST00000637551 IL15RAQ13261 267 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 MLANAQ16655 118 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 SPANXN5Q5MJ07 72 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 OR8G2PQ6IF36 304 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 RHPN1-AS1Q9BWJ2 59 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 PSENENQ9NZ42 101 aa13.74□□□□□ -0.21
CLN3-259ENST00000637551 IZUMO1RA6ND01 250 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 C5orf51A6NDU8 294 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 OR4C46A6NHA9 309 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 RD3LP0DJH9 198 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 PVALBP20472 110 aaPredicted RBP13.73□□□□□ -0.21
CLN3-259ENST00000637551 CMC4P56277 68 aaPredicted RBP13.73□□□□□ -0.21
CLN3-259ENST00000637551 DLK1P80370 383 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 OR51G1Q8NGK1 321 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 ACY3Q96HD9 319 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 GRAMD2BQ96HH9 432 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 C19orf73Q9NVV2 129 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 GSKIPQ9P0R6 139 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 SLC45A2Q9UMX9 530 aa13.73□□□□□ -0.21
CLN3-259ENST00000637551 C7orf66A4D0T2 115 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 S100A7P31151 101 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 EIF2B2P49770 351 aaKnown RBP13.72□□□□□ -0.21
CLN3-259ENST00000637551 PAX9P55771 341 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 TIGITQ495A1 244 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 FAM90A2PQ658T7 463 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 C11orf87Q6NUJ2 197 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 TMEM144Q7Z5S9 345 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 WDR89Q96FK6 387 aaPredicted RBP13.72□□□□□ -0.21
CLN3-259ENST00000637551 NEURL2Q9BR09 285 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 NMES1Q9C002 83 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 U3KQE9 123 aa13.72□□□□□ -0.21
CLN3-259ENST00000637551 COL7A1Q02388 2944 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 ZFP92A6NM28 416 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 PMS2P5A8MQ11 134 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 IGHV4-30-4P0DP06 118 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 EDN2P20800 178 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 CD81P60033 236 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 GUCA2BQ16661 112 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 OR10P1Q8NGE3 313 aa13.71□□□□□ -0.21
CLN3-259ENST00000637551 STAB2Q8WWQ8 2551 aa13.71□□□□□ -0.22
CLN3-259ENST00000637551 IGKV1D-37A0A075B6S9 117 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 FAM25EA8MYX2 175 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 K7EPK0 472 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 CCSO14618 274 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 SCGB1D2O95969 90 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms