RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 A8MWP6 167 aa13.51□□□□□ -0.25
CLN3-247ENST00000636351 PRSS54Q6PEW0 395 aa13.51□□□□□ -0.25
CLN3-247ENST00000636351 CACNG8Q8WXS5 425 aa13.51□□□□□ -0.25
CLN3-247ENST00000636351 TMEM213A2RRL7 107 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 ZNF207O43670 478 aaKnown RBP13.5□□□□□ -0.25
CLN3-247ENST00000636351 SIX6O95475 246 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 TMEM50AO95807 157 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 FOLR2P14207 255 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 EDN2P20800 178 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 OR10J1P30954 320 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 TM4SF20Q53R12 229 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 ZNF600Q6ZNG1 722 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 NPIPB3Q92617 1050 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 SMIM8Q96KF7 97 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 DAZ1Q9NQZ3 744 aaKnown RBP13.5□□□□□ -0.25
CLN3-247ENST00000636351 SIGLEC8Q9NYZ4 499 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 SMAD5-AS1Q9Y6J3 95 aa13.5□□□□□ -0.25
CLN3-247ENST00000636351 TRAV30A0A087WSZ9 112 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 K7EPK0 472 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 IGLV1-51P01701 117 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 TIGITQ495A1 244 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 OR8G2PQ6IF36 304 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 TMEM116Q8NCL8 245 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 OR1S2Q8NGQ3 325 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 MGAT4CQ9UBM8 478 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 ALG5Q9Y673 324 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 RYR2Q92736 4967 aa13.49□□□□□ -0.25
CLN3-247ENST00000636351 C7orf66A4D0T2 115 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 METTL15P1P0C7V9 234 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 PVALBP20472 110 aaPredicted RBP13.48□□□□□ -0.25
CLN3-247ENST00000636351 CBLN1P23435 193 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 GPX4P36969 197 aaPredicted RBP13.48□□□□□ -0.25
CLN3-247ENST00000636351 BCAP31P51572 246 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 ELLP55199 621 aaPredicted RBP13.48□□□□□ -0.25
CLN3-247ENST00000636351 TAS2R30P59541 319 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 MUC7Q8TAX7 377 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 MARC2Q969Z3 335 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 PUS1Q9Y606 427 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-247ENST00000636351 SELENOKQ9Y6D0 94 aa13.48□□□□□ -0.25
CLN3-247ENST00000636351 SMCO3A2RU48 225 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 TSC22D2O75157 780 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 IGLC1P0CG04 106 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 RAB32Q13637 225 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 CASC10Q5T4H9 136 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 LCN12Q6JVE5 192 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 BTNL8Q6UX41 500 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 ADAMTSL5Q6ZMM2 481 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 SBSPONQ8IVN8 264 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 RCHY1Q96PM5 261 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 GINS3Q9BRX5 216 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 SORL1Q92673 2214 aa13.47□□□□□ -0.25
CLN3-247ENST00000636351 ZFP92A6NM28 416 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 IGKV1-17P01599 117 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 CAV2P51636 162 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 PAX9P55771 341 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 AKR1C1Q04828 323 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 GAMTQ14353 236 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 CD300EQ496F6 205 aaPredicted RBP13.46□□□□□ -0.25
CLN3-247ENST00000636351 LRRC37A5PQ49AS3 106 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 TOMM20LQ6UXN7 152 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 ACOT7LQ6ZUV0 252 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 TECRQ9NZ01 308 aaKnown RBP13.46□□□□□ -0.25
CLN3-247ENST00000636351 MRPL27Q9P0M9 148 aaKnown RBP13.46□□□□□ -0.25
CLN3-247ENST00000636351 DNAH7Q8WXX0 4024 aa13.46□□□□□ -0.25
CLN3-247ENST00000636351 GP9P14770 177 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 CYCSP99999 105 aaKnown RBP13.45□□□□□ -0.26
CLN3-247ENST00000636351 TMEM14EPQ6UXP3 125 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 OR2K2Q8NGT1 345 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 Q8WTZ3 238 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 NMES1Q9C002 83 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 MLXQ9UH92 298 aa13.45□□□□□ -0.26
CLN3-247ENST00000636351 IGHV3-49A0A0A0MS15 119 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 PRSS46E5RG02 174 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 K7EMT4 169 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 CCNKO75909 580 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 RRAS2P62070 204 aaPredicted RBP13.44□□□□□ -0.26
CLN3-247ENST00000636351 DEFB114Q30KQ6 69 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 OR10P1Q8NGE3 313 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 ZNF414Q96IQ9 312 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 ZFAND3Q9H8U3 227 aa13.44□□□□□ -0.26
CLN3-247ENST00000636351 TRAV14DV4A0A0A6YYC5 116 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 IZUMO1RA6ND01 250 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 RLN2P04090 185 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 FABP1P07148 127 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 FRMD6-AS1P0C7T7 363 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 RD3LP0DJH9 198 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 BMI1P35226 326 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 H2BFSP57053 126 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 YPEL3P61236 119 aaPredicted RBP13.43□□□□□ -0.26
CLN3-247ENST00000636351 IL15RAQ13261 267 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 GUCA2BQ16661 112 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 METTL26Q96S19 204 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 MED28Q9H204 178 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 TENM2Q9NT68 2774 aa13.43□□□□□ -0.26
CLN3-247ENST00000636351 SACSQ9NZJ4 4579 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 IGHV3OR16-13A0A075B7E8 117 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 IGHV3-74A0A0B4J1X5 117 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 IGHV7-4-1A0A0J9YVY3 117 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 DEDDO75618 318 aa13.42□□□□□ -0.26
CLN3-247ENST00000636351 TOMM40O96008 361 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms