RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TMEM116Q8NCL8 245 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 OR1S2Q8NGQ3 325 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 CACNG8Q8WXS5 425 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 NPIPB3Q92617 1050 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 DAZ1Q9NQZ3 744 aaKnown RBP13.74□□□□□ -0.21
CLN3-239ENST00000628023 SIGLEC8Q9NYZ4 499 aa13.74□□□□□ -0.21
CLN3-239ENST00000628023 ZNF207O43670 478 aaKnown RBP13.73□□□□□ -0.21
CLN3-239ENST00000628023 TSC22D2O75157 780 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 IGLV1-51P01701 117 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 EDN2P20800 178 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 BCAP31P51572 246 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 ELLP55199 621 aaPredicted RBP13.73□□□□□ -0.21
CLN3-239ENST00000628023 TAS2R30P59541 319 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 OR8G2PQ6IF36 304 aa13.73□□□□□ -0.21
CLN3-239ENST00000628023 ZNF256Q9Y2P7 627 aaPredicted RBP13.73□□□□□ -0.21
CLN3-239ENST00000628023 METTL15P1P0C7V9 234 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 IGLC1P0CG04 106 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 CBLN1P23435 193 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 CAV2P51636 162 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 PAX9P55771 341 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 CYCSP99999 105 aaKnown RBP13.72□□□□□ -0.21
CLN3-239ENST00000628023 RAB32Q13637 225 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 GAMTQ14353 236 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 LRRC37A5PQ49AS3 106 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 MARC2Q969Z3 335 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 B9D2Q9BPU9 175 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 GINS3Q9BRX5 216 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 NMES1Q9C002 83 aa13.72□□□□□ -0.21
CLN3-239ENST00000628023 PUS1Q9Y606 427 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLN3-239ENST00000628023 SMCO3A2RU48 225 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 ZFP92A6NM28 416 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 AKR1C1Q04828 323 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 LCN12Q6JVE5 192 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 TOMM20LQ6UXN7 152 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 ACOT7LQ6ZUV0 252 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 PRR25Q96S07 402 aa13.71□□□□□ -0.21
CLN3-239ENST00000628023 TECRQ9NZ01 308 aaKnown RBP13.71□□□□□ -0.21
CLN3-239ENST00000628023 MRPL27Q9P0M9 148 aaKnown RBP13.71□□□□□ -0.21
CLN3-239ENST00000628023 IGKV1-17P01599 117 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 BTNL8Q6UX41 500 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 TMEM14EPQ6UXP3 125 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 ADAMTSL5Q6ZMM2 481 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 OR10P1Q8NGE3 313 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 Q8WTZ3 238 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 MED28Q9H204 178 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 SELENOKQ9Y6D0 94 aa13.7□□□□□ -0.22
CLN3-239ENST00000628023 PRSS46E5RG02 174 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 K7EMT4 169 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 RLN2P04090 185 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 H2BFSP57053 126 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 YPEL3P61236 119 aaPredicted RBP13.69□□□□□ -0.22
CLN3-239ENST00000628023 RRAS2P62070 204 aaPredicted RBP13.69□□□□□ -0.22
CLN3-239ENST00000628023 IL15RAQ13261 267 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 OXA1LQ15070 435 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 CD300EQ496F6 205 aaPredicted RBP13.69□□□□□ -0.22
CLN3-239ENST00000628023 OR2K2Q8NGT1 345 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 COL7A1Q02388 2944 aa13.69□□□□□ -0.22
CLN3-239ENST00000628023 IGHV3-49A0A0A0MS15 119 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 TRAV14DV4A0A0A6YYC5 116 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 CCNKO75909 580 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 FABP1P07148 127 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 GP9P14770 177 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 BMI1P35226 326 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 DEFB114Q30KQ6 69 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 ZNF414Q96IQ9 312 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 ZFAND3Q9H8U3 227 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 MLXQ9UH92 298 aa13.68□□□□□ -0.22
CLN3-239ENST00000628023 IGHV7-4-1A0A0J9YVY3 117 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 DEDDO75618 318 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 SCAF4O95104 1147 aaKnown RBP13.67□□□□□ -0.22
CLN3-239ENST00000628023 TOMM40O96008 361 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 PET100P0DJ07 73 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 RD3LP0DJH9 198 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 C8orf88P0DMB2 117 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 DLK1P80370 383 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 GUCA2BQ16661 112 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 STX12Q86Y82 276 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 PPP1R1CQ8WVI7 109 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 NARS2Q96I59 477 aaKnown RBP13.67□□□□□ -0.22
CLN3-239ENST00000628023 WWC2-AS2Q96NR7 200 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 METTL26Q96S19 204 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 LYRM2Q9NU23 88 aaPredicted RBP13.67□□□□□ -0.22
CLN3-239ENST00000628023 SORL1Q92673 2214 aa13.67□□□□□ -0.22
CLN3-239ENST00000628023 FAM24AA6NFZ4 105 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 PMS2P5A8MQ11 134 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 IL4P05112 153 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 NHLRC4P0CG21 123 aaPredicted RBP13.66□□□□□ -0.22
CLN3-239ENST00000628023 RBPMS2Q6ZRY4 209 aaKnown RBP13.66□□□□□ -0.22
CLN3-239ENST00000628023 TRGV9Q99603 122 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 C11orf1Q9H5F2 150 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 SMPXQ9UHP9 88 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 NBEAL2Q6ZNJ1 2754 aa13.66□□□□□ -0.22
CLN3-239ENST00000628023 IGHV3OR16-13A0A075B7E8 117 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 IGHV3-74A0A0B4J1X5 117 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 IZUMO1RA6ND01 250 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 E5RGE8 158 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 CST7O76096 145 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 NPPCP23582 126 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 ZNF90Q03938 601 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 SLC38A11Q08AI6 406 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms