RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PLGLAQ15195 96 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 C8orf31Q8N9H6 132 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 CLUHP3Q96NS8 147 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 CBLN4Q9NTU7 201 aa8.52□□□□□ -1.05
CUX1-221ENST00000622516 IGLC7A0M8Q6 106 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 TIMM23O14925 209 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 LINC00614P0C842 121 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 HIST1H1BP16401 226 aaKnown RBP8.51□□□□□ -1.05
CUX1-221ENST00000622516 SUMO1P63165 101 aaKnown RBP8.51□□□□□ -1.05
CUX1-221ENST00000622516 OR5I1Q13606 314 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 FAM103A1Q9BTL3 118 aaKnown RBP8.51□□□□□ -1.05
CUX1-221ENST00000622516 RPH3ALQ9UNE2 315 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 SIGLEC9Q9Y336 463 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 TRBV24-1A0A075B6N3 115 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 IGKV1D-37A0A075B6S9 117 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 SLC17A3O00476 420 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 OR5G3P0C626 314 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 ORM2P19652 201 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 LGALS7P47929 136 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 FAM71F2Q6NXP2 309 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 UNQ6494/PRO21346Q6UXR6 183 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 PPP1R27Q86WC6 154 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 OR4X1Q8NH49 305 aa8.51□□□□□ -1.05
CUX1-221ENST00000622516 GAR1Q9NY12 217 aaKnown RBP8.51□□□□□ -1.05
CUX1-221ENST00000622516 F6UZH7 168 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 LIPFP07098 398 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 PRB4P10163 310 aaPredicted RBP8.5□□□□□ -1.05
CUX1-221ENST00000622516 RPL27AP46776 148 aaKnown RBP8.5□□□□□ -1.05
CUX1-221ENST00000622516 TMEM249Q2WGJ8 235 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 PATE2Q6UY27 113 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 LINC00479Q96M42 142 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 PRO1933Q9H354 126 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 UBTD1Q9HAC8 227 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 GGTLC3B5MD39 225 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 PPP5D1E7EU14 171 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 C19orf84I3L1E1 186 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 K7EN84 100 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 MT-CO2P00403 227 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 HOXA5P20719 270 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 GNLYP22749 145 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 NHLRC2Q8NBF2 726 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 OR4A5Q8NH83 315 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 C22orf15Q8WYQ4 148 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 DNAJC4Q9NNZ3 241 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 TECRQ9NZ01 308 aaKnown RBP8.5□□□□□ -1.05
CUX1-221ENST00000622516 RNF24Q9Y225 148 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 S4R3C0 116 aa8.5□□□□□ -1.05
CUX1-221ENST00000622516 H3BTX0 84 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 VENTXO95231 258 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 CDX1P47902 265 aaPredicted RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 SUB1P53999 127 aaKnown RBP eCLIP8.49□□□□□ -1.05
CUX1-221ENST00000622516 RBX1P62877 108 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 LEMD1Q68G75 181 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 C11orf71Q6IPW1 123 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 OR5AU1Q8NGC0 362 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 OR2T10Q8NGZ9 312 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 SGMS2Q8NHU3 365 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 CACNG8Q8WXS5 425 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 TIMD4Q96H15 378 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 SFRP2Q96HF1 295 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 ZNF355PQ9NSJ1 428 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 FNDC10F2Z333 226 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 PHOX2AO14813 284 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 COX7A2P2O60397 106 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 HES1Q14469 280 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 MMDQ15546 238 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 MMD2Q8IY49 270 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 OR1B1Q8NGR6 318 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 ANAPC16Q96DE5 110 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 SGK494Q96LW2 274 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 SSBP3Q9BWW4 388 aaPredicted RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 SLC25A2Q9BXI2 301 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 FAM208BQ5VWN6 2430 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 LOC105371242A0A075B767 164 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 CNIH1O95406 144 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 C8orf88P0DMB2 117 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 ZNF25P17030 456 aaPredicted RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 ZFP36P26651 326 aaKnown RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 UBE2L3P68036 154 aaKnown RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 KLF17Q5JT82 389 aaPredicted RBP8.49□□□□□ -1.05
CUX1-221ENST00000622516 TNFRSF14Q92956 283 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 FAM167A-AS1Q96KT0 104 aa8.49□□□□□ -1.05
CUX1-221ENST00000622516 CUBNO60494 3623 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 POLQO75417 2590 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 ZNF320A2RRD8 509 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 PSMB11A5LHX3 300 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 SPINK4O60575 86 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 CRYGBP07316 175 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 COMPP49747 757 aaPredicted RBP8.48□□□□□ -1.05
CUX1-221ENST00000622516 PQLC2Q6ZP29 291 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 TEX45Q8NA69 505 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 BEND2Q8NDZ0 799 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 OR10D4PQ8NGN7 298 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 RNASEH2CQ8TDP1 164 aaKnown RBP8.48□□□□□ -1.05
CUX1-221ENST00000622516 TNFRSF19Q9NS68 423 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 MDFIC2A0A1B0GVS7 189 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 TCRBV4S1A1TA0A5B7 111 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 HELTA6NFD8 242 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 FRMD6-AS1P0C7T7 363 aa8.48□□□□□ -1.05
CUX1-221ENST00000622516 HTR1DP28221 377 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms