RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 TMEM167AQ8TBQ9 72 aa16.46■□□□□ 0.23
NEK3-208ENST00000618534 SSBP4Q9BWG4 385 aaPredicted RBP16.46■□□□□ 0.23
NEK3-208ENST00000618534 NKX6-3A6NJ46 265 aa16.46■□□□□ 0.23
NEK3-208ENST00000618534 INS-IGF2F8WCM5 200 aa16.46■□□□□ 0.23
NEK3-208ENST00000618534 HNRNPA3P51991 378 aaKnown RBP16.46■□□□□ 0.23
NEK3-208ENST00000618534 FAM27E3Q08E93 113 aa16.46■□□□□ 0.23
NEK3-208ENST00000618534 FCN3O75636 299 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 LINC00614P0C842 121 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 PRR31Q5SQ13 230 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 STPG4Q8N801 248 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 C7orf69Q9H7B7 122 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 HIGD1CA8MV81 97 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 HSBP1O75506 76 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 CRYABP02511 175 aaKnown RBP16.45■□□□□ 0.22
NEK3-208ENST00000618534 CD40P25942 277 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 SGK494Q96LW2 274 aa16.45■□□□□ 0.22
NEK3-208ENST00000618534 CAMPP49913 170 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 LINC00305Q7Z4B0 112 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 C11orf42Q8N5U0 333 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 ZFP30Q9Y2G7 519 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 SPAARA0A1B0GVQ0 90 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 VWC2LB2RUY7 222 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 ZCCHC24Q8N2G6 241 aaKnown RBP16.44■□□□□ 0.22
NEK3-208ENST00000618534 RBMXL3Q8N7X1 1067 aaKnown RBP16.44■□□□□ 0.22
NEK3-208ENST00000618534 THAP8Q8NA92 274 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 OR4C13Q8NGP0 309 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 ALKBH7Q9BT30 221 aaPredicted RBP16.44■□□□□ 0.22
NEK3-208ENST00000618534 SAP30LQ9HAJ7 183 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 LAMTOR2Q9Y2Q5 125 aa16.44■□□□□ 0.22
NEK3-208ENST00000618534 FAM181BA6NEQ2 426 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 MYCNOSP40205 109 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 KLF5Q13887 457 aaPredicted RBP16.43■□□□□ 0.22
NEK3-208ENST00000618534 C1orf185Q5T7R7 199 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 TMEM200BQ69YZ2 307 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 EBLN2Q6P2I7 272 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 RNASEKQ6P5S7 137 aaKnown RBP16.43■□□□□ 0.22
NEK3-208ENST00000618534 LHFPL4Q7Z7J7 247 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 ZADH2Q8N4Q0 377 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 TNFRSF19Q9NS68 423 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 M0R2Z0 102 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 MOSP00540 346 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 IGLV2-23P01705 113 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 HIST1H1EP10412 219 aaKnown RBP16.43■□□□□ 0.22
NEK3-208ENST00000618534 RUSC1-AS1Q66K80 236 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 KLHDC1Q8N7A1 406 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 DEFB124Q8NES8 71 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 OR10X1Q8NGY0 326 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 BLNKQ8WV28 456 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 TPSG1Q9NRR2 321 aa16.43■□□□□ 0.22
NEK3-208ENST00000618534 SMG1Q96Q15 3661 aaKnown RBP16.42■□□□□ 0.22
NEK3-208ENST00000618534 FTH1P19P0C7X4 201 aa16.42■□□□□ 0.22
NEK3-208ENST00000618534 UBE2G1P62253 170 aa16.42■□□□□ 0.22
NEK3-208ENST00000618534 MEF2CQ06413 473 aaPredicted RBP16.42■□□□□ 0.22
NEK3-208ENST00000618534 PDPNQ86YL7 162 aa16.42■□□□□ 0.22
NEK3-208ENST00000618534 OR4A5Q8NH83 315 aa16.42■□□□□ 0.22
NEK3-208ENST00000618534 VSTM2AQ8TAG5 236 aa16.42■□□□□ 0.22
NEK3-208ENST00000618534 OR2J3O76001 311 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 NDUFB8O95169 186 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 SLC25A5P05141 298 aaKnown RBP16.41■□□□□ 0.22
NEK3-208ENST00000618534 SUB1P53999 127 aaKnown RBP eCLIP16.41■□□□□ 0.22
NEK3-208ENST00000618534 RPH3ALQ9UNE2 315 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 RP1L1Q8IWN7 2480 aaPredicted RBP16.41■□□□□ 0.22
NEK3-208ENST00000618534 ORM2P19652 201 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 Q56UQ5 140 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 DMRTA1Q5VZB9 504 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 H1FXQ92522 213 aaKnown RBP16.41■□□□□ 0.22
NEK3-208ENST00000618534 CHRDL1Q9BU40 450 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 EPDR1Q9UM22 224 aa16.41■□□□□ 0.22
NEK3-208ENST00000618534 A0A1W2PPI3 338 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 SIAH2O43255 324 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 CEACAM4O75871 244 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 PMCHL1Q16048 86 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 SSUH2Q9Y2M2 353 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 PLXNB1O43157 2135 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 A0A1B0GXF2 115 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 C22orf46C9J442 243 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 SLC25A17O43808 307 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 TCF24Q7RTU0 167 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 OR8B3Q8NGG8 313 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 OR1B1Q8NGR6 318 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 OR8B2Q96RD0 313 aa16.4■□□□□ 0.22
NEK3-208ENST00000618534 PGPA6NDG6 321 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 TSPOP30536 169 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 PIP4P1Q86T03 277 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 TNFRSF1AP19438 455 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 KIR3DL3Q8N743 410 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 OR2D3Q8NGH3 330 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 RITA1Q96K30 269 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 WASHC3Q9Y3C0 194 aa16.39■□□□□ 0.21
NEK3-208ENST00000618534 LINC00322Q6ZN03 302 aaPredicted RBP16.38■□□□□ 0.21
NEK3-208ENST00000618534 ATP5L2Q7Z4Y8 100 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 PERPQ96FX8 193 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 URB1-AS1Q96HZ7 61 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 C2orf70A6NJV1 201 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 HCP5Q6MZN7 132 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 SPATA12Q7Z6I5 190 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 NUP37Q8NFH4 326 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 ST6GALNAC6Q969X2 333 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 PPP1R14DQ9NXH3 145 aa16.38■□□□□ 0.21
NEK3-208ENST00000618534 TRAV9-2A0A087WT02 112 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms