RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, human

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE3-208	ENST00000614678	C8orf88	P0DMB2	117 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	RPL35A	P18077	110 aa	Known RBP	4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	NPY1R	P25929	384 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	RRAS2	P62070	204 aa	Predicted RBP	4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	IFITM2	Q01629	132 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	FAM209B	Q5JX69	171 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SPANXN5	Q5MJ07	72 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	RCHY1	Q96PM5	261 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SRD5A3	Q9H8P0	318 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	THYN1	Q9P016	225 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	PEMT	Q9UBM1	199 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	PRSS46	E5RG02	174 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SSSCA1	O60232	199 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	IGFL4	Q6B9Z1	124 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	ZFAND6	Q6FIF0	208 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SLC25A21	Q9BQT8	299 aa	Predicted RBP	4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SRSF8	Q9BRL6	282 aa	Known RBP	4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	SMPX	Q9UHP9	88 aa		4.23	□□□□□ -1.73
CPNE3-208	ENST00000614678	FAM25E	A8MYX2	175 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	CLN5	O75503	358 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	PSG1	P11464	419 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	FAU	P35544	74 aa	Known RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	AP3S2	P59780	193 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	TATDN3	Q17R31	274 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR8G2P	Q6IF36	304 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	LYG2	Q86SG7	212 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	C17orf77	Q96MU5	243 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	RCL1	Q9Y2P8	373 aa	Known RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	IGHV7-4-1	A0A0J9YVY3	117 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	NDUFA4	O00483	81 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	DEFB4A	O15263	64 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	IFNA4	P05014	189 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	RPL11	P62913	178 aa	Known RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	LINC00322	Q6ZN03	302 aa	Predicted RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	CADM3	Q8N126	398 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR4D5	Q8NGN0	318 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	PBDC1	Q9BVG4	233 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	ENY2	Q9NPA8	101 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	RFNG	Q9Y644	331 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	TRAV14DV4	A0A0A6YYC5	116 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	EIF3G	O75821	320 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	IL4	P05112	153 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	METTL15P1	P0C7V9	234 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR10J1	P30954	320 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	FCGR2B	P31994	310 aa	Predicted RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	C2orf83	Q53S99	150 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	FAM90A2P	Q658T7	463 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	LCN12	Q6JVE5	192 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	LRTM2	Q8N967	370 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	TMEM116	Q8NCL8	245 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR51G1	Q8NGK1	321 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	WDR12	Q9GZL7	423 aa	Known RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	SIGLEC8	Q9NYZ4	499 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678		U3KQK5	164 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	C7orf66	A4D0T2	115 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	PMS2P5	A8MQ11	134 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	MBP	P02686	304 aa	Predicted RBP	4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	HTR2B	P41595	481 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	GDF5OS	Q5U4N7	250 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	SLC16A13	Q7RTY0	426 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR4X1	Q8NH49	305 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	OR52E5	Q8NH55	327 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	TUBA4B	Q9H853	241 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	DOK5	Q9P104	306 aa		4.22	□□□□□ -1.73
CPNE3-208	ENST00000614678	INS-IGF2	F8WCM5	200 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	SYNGR2	O43760	224 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	UPK1B	O75841	260 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	IAH1	Q2TAA2	248 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	DEFB135	Q30KP9	77 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	ACOT7L	Q6ZUV0	252 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	TCF24	Q7RTU0	167 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	GTSCR1	Q86UQ5	136 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	DUSP18	Q8NEJ0	188 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	UHRF2	Q96PU4	802 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	HIPK2	Q9H2X6	1198 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	MRPL27	Q9P0M9	148 aa	Known RBP	4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	KNCN	A6PVL3	124 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	PRM2	P04554	102 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	ID3	Q02535	119 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	MORN5	Q5VZ52	161 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	MITD1	Q8WV92	249 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	IL22RA2	Q969J5	263 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	TM2D3	Q9BRN9	247 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	MS4A6A	Q9H2W1	248 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	CLEC5A	Q9NY25	188 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	ZNF688	P0C7X2	276 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	STXBP6	Q8NFX7	210 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	OR1L6	Q8NGR2	347 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	NDUFA13	Q9P0J0	144 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	UFC1	Q9Y3C8	167 aa		4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	LSM5	Q9Y4Y9	91 aa	Known RBP	4.21	□□□□□ -1.74
CPNE3-208	ENST00000614678	FAM240B	A0A1B0GVZ2	78 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678		F6UB75	175 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678	CST7	O76096	145 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678	ANXA3	P12429	323 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678	LRRC37A5P	Q49AS3	106 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678	SPSB3	Q6PJ21	355 aa		4.2	□□□□□ -1.74
CPNE3-208	ENST00000614678	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms