RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FAM90A9PA6NNJ1 464 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 TMEM108Q6UXF1 575 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 STXBP6Q8NFX7 210 aa10.31□□□□□ -0.76
LIG1-221ENST00000613670 PROP1O75360 226 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 LINC00614P0C842 121 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 TSPOP30536 169 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 S100A7P31151 101 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 GLRXP35754 106 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 ZNF841Q6ZN19 808 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 MALRD1Q5VYJ5 2156 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 TRGV8A0A0C4DH27 118 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 hDV102S1A0JD36 115 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 CORTO00230 105 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 RPL27AP46776 148 aaKnown RBP10.3□□□□□ -0.76
LIG1-221ENST00000613670 MUC15Q8N387 334 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 OR4C13Q8NGP0 309 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 C18orf32Q8TCD1 76 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 ALKBH7Q9BT30 221 aaPredicted RBP10.3□□□□□ -0.76
LIG1-221ENST00000613670 VPS13AQ96RL7 3174 aa10.3□□□□□ -0.76
LIG1-221ENST00000613670 FAM181BA6NEQ2 426 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 MMP23AO75900 390 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 WISP2O76076 250 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 AARDQ4LEZ3 155 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 OR4F17Q8NGA8 305 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 HCFC1P51610 2035 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 IGKV3-15P01624 115 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 UTF1Q5T230 341 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 BPIFA4PQ86YQ2 179 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 KIR3DL3Q8N743 410 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 CHODLQ9H9P2 273 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 INSIG2Q9Y5U4 225 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 S4R3C0 116 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 PPIAL4EA0A075B759 164 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 PPIAL4DF5H284 164 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 P0C879 139 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 PPIAL4FP0DN26 164 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 CSN1S1P47710 185 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 MPV17L2Q567V2 206 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 RPEQ96AT9 228 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 ASCL2Q99929 193 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 RASL11BQ9BPW5 248 aa10.29□□□□□ -0.76
LIG1-221ENST00000613670 REV3LO60673 3130 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 SFTPCP11686 197 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 SPRNQ5BIV9 151 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 SP5Q6BEB4 398 aaPredicted RBP10.28□□□□□ -0.76
LIG1-221ENST00000613670 GPR82Q96P67 336 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 LY96Q9Y6Y9 160 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 COL6A6A6NMZ7 2263 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 EXPH5Q8NEV8 1989 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 PIEZO2Q9H5I5 2752 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 TRAV8-1A0A0A6YYK1 113 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 A0A1B0GWJ7 208 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 FCER1GP30273 86 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 FBLN7Q53RD9 439 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.28□□□□□ -0.76
LIG1-221ENST00000613670 OSR1Q8TAX0 266 aaPredicted RBP10.28□□□□□ -0.76
LIG1-221ENST00000613670 TMEM14BQ9NUH8 114 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 HSPB8Q9UJY1 196 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 HIGD1AQ9Y241 93 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 KMT2EQ8IZD2 1858 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 PRRG2O14669 202 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 RAB37Q96AX2 223 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 RPP21Q9H633 154 aaKnown RBP10.28□□□□□ -0.76
LIG1-221ENST00000613670 TP53TG3Q9ULZ0 132 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 EPDR1Q9UM22 224 aa10.28□□□□□ -0.76
LIG1-221ENST00000613670 LSM4Q9Y4Z0 139 aaKnown RBP10.28□□□□□ -0.76
LIG1-221ENST00000613670 SRRM4A7MD48 611 aaKnown RBP10.27□□□□□ -0.76
LIG1-221ENST00000613670 RNASE2P10153 161 aaKnown RBP10.27□□□□□ -0.76
LIG1-221ENST00000613670 CACNG8Q8WXS5 425 aa10.27□□□□□ -0.76
LIG1-221ENST00000613670 C11orf52Q96A22 123 aa10.27□□□□□ -0.76
LIG1-221ENST00000613670 FAM87AP0C7U9 286 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 PRR20EP86478 221 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 PRR20CP86479 221 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 PRR20DP86480 221 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 PRR20BP86481 221 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 PRR20AP86496 221 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 COLQQ9Y215 455 aaPredicted RBP10.27□□□□□ -0.77
LIG1-221ENST00000613670 ZGRF1Q86YA3 2104 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 RIGQ13278 110 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 C1orf162Q8NEQ5 155 aaPredicted RBP10.27□□□□□ -0.77
LIG1-221ENST00000613670 RPUSD1Q9UJJ7 312 aaKnown RBP10.27□□□□□ -0.77
LIG1-221ENST00000613670 F2RL2O00254 374 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 LOXL3P58215 753 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 MORN5Q5VZ52 161 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 C12orf54Q6X4T0 127 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 SPACA3Q8IXA5 215 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 NEUROG1Q92886 237 aa10.27□□□□□ -0.77
LIG1-221ENST00000613670 CREBBPQ92793 2442 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 NAV3Q8IVL0 2385 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 HLA-DRB1P01911 266 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 NMUP48645 174 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 C2orf83Q53S99 150 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 LDLRAD2Q5SZI1 272 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 ZNF71Q9NQZ8 489 aaPredicted RBP10.26□□□□□ -0.77
LIG1-221ENST00000613670 IGLL1P15814 213 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 AAMDCQ9H7C9 122 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 AP5S1Q9NUS5 200 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 FBLL1A6NHQ2 334 aaKnown RBP10.26□□□□□ -0.77
LIG1-221ENST00000613670 WFDC3Q8IUB2 231 aa10.26□□□□□ -0.77
LIG1-221ENST00000613670 C5orf17Q8NAS9 161 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms