RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FOLR2P14207 255 aa12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 GPX4P36969 197 aaPredicted RBP12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 TM4SF20Q53R12 229 aa12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 AURKAIP1Q9NWT8 199 aaPredicted RBP12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 PSENENQ9NZ42 101 aa12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 UFC1Q9Y3C8 167 aa12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 STRAPQ9Y3F4 350 aaKnown RBP12.56□□□□□ -0.4
CCDC28A-202ENST00000611852 SORL1Q92673 2214 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 IGHV3OR16-8A0A075B7F1 116 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 PRSS46E5RG02 174 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 IGKV1-17P01599 117 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 C1QBP02746 253 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 CBLN1P23435 193 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 ELLP55199 621 aaPredicted RBP12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 RAP2BP61225 183 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 CACNG8Q8WXS5 425 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 NPIPB3Q92617 1050 aa12.55□□□□□ -0.4
CCDC28A-202ENST00000611852 TRAV30A0A087WSZ9 112 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 K7EPK0 472 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 SIX6O95475 246 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 IGLC1P0CG04 106 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 TAS2R30P59541 319 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 ZNF600Q6ZNG1 722 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 ACY3Q96HD9 319 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 C20orf24Q9BUV8 137 aa12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 DAZ1Q9NQZ3 744 aaKnown RBP12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 LSM5Q9Y4Y9 91 aaKnown RBP12.54□□□□□ -0.4
CCDC28A-202ENST00000611852 K7EMT4 169 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 TSC22D2O75157 780 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 SCGB2A1O75556 95 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 YIF1AO95070 293 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 C8orf88P0DMB2 117 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 OR10J1P30954 320 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 GAMTQ14353 236 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 TIGITQ495A1 244 aa12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 ZNF256Q9Y2P7 627 aaPredicted RBP12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 PUS1Q9Y606 427 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC28A-202ENST00000611852 WI2-2373I1.2A0A1W2PRP0 233 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 PMS2P5A8MQ11 134 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 H2BFSP57053 126 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 RAB32Q13637 225 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 DEFB114Q30KQ6 69 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 TOMM20LQ6UXN7 152 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 TMEM14EPQ6UXP3 125 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 OR1S2Q8NGQ3 325 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 OR2T35Q8NGX2 323 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 MARC2Q969Z3 335 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 SLC35E1Q96K37 410 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 C11orf1Q9H5F2 150 aa12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 MRPL27Q9P0M9 148 aaKnown RBP12.52□□□□□ -0.4
CCDC28A-202ENST00000611852 SMLR1H3BR10 107 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 ZNF207O43670 478 aaKnown RBP12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 S100A10P60903 97 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 CD300EQ496F6 205 aaPredicted RBP12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 DYNLRB2Q8TF09 96 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 HYLS1Q96M11 299 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 PRR25Q96S07 402 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 NMES1Q9C002 83 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 ZFAND3Q9H8U3 227 aa12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 TECRQ9NZ01 308 aaKnown RBP12.52□□□□□ -0.41
CCDC28A-202ENST00000611852 L7N2F9 121 aa12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 NKX2-5P52952 324 aaPredicted RBP12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 YPEL3P61236 119 aaPredicted RBP12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 VAMP2P63027 116 aa12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 OR2K2Q8NGT1 345 aa12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 DNAH3Q8TD57 4116 aa12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 MLXQ9UH92 298 aa12.51□□□□□ -0.41
CCDC28A-202ENST00000611852 IZUMO1RA6ND01 250 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 K7EIL1 84 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 METTL15P1P0C7V9 234 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 GP9P14770 177 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 CYCSP99999 105 aaKnown RBP12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 OR8G2PQ6IF36 304 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 LCN12Q6JVE5 192 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 BTNL8Q6UX41 500 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 ACOT7LQ6ZUV0 252 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 GINS3Q9BRX5 216 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 SELENOKQ9Y6D0 94 aa12.5□□□□□ -0.41
CCDC28A-202ENST00000611852 IGKV1D-37A0A075B6S9 117 aa12.49□□□□□ -0.41
CCDC28A-202ENST00000611852 TRAV14DV4A0A0A6YYC5 116 aa12.49□□□□□ -0.41
CCDC28A-202ENST00000611852 PVALBP20472 110 aaPredicted RBP12.49□□□□□ -0.41
CCDC28A-202ENST00000611852 WDR89Q96FK6 387 aaPredicted RBP12.49□□□□□ -0.41
CCDC28A-202ENST00000611852 SMPXQ9UHP9 88 aa12.49□□□□□ -0.41
CCDC28A-202ENST00000611852 IGKV1OR2-108A0A075B7D4 117 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 IGHV7-4-1A0A0J9YVY3 117 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 ZFP92A6NM28 416 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 SCAF4O95104 1147 aaKnown RBP12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 CAV2P51636 162 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 THAP8Q8NA92 274 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 OR10P1Q8NGE3 313 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 Q8WTZ3 238 aa12.48□□□□□ -0.41
CCDC28A-202ENST00000611852 DEDDO75618 318 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 TOMM40O96008 361 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 RD3LP0DJH9 198 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 FGL1Q08830 312 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 LRRC37A5PQ49AS3 106 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 TMEM61Q8N0U2 210 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 MRAPQ8TCY5 172 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 LYRM2Q9NU23 88 aaPredicted RBP12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 IGHV3-49A0A0A0MS15 119 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms