RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 OR4C12Q96R67 309 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 PRR25Q96S07 402 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 FNDC4Q9H6D8 234 aaPredicted RBP6.72□□□□□ -1.33
TRIM28-214ENST00000600840 GNB4Q9HAV0 340 aa6.72□□□□□ -1.33
TRIM28-214ENST00000600840 CEBPZOSA8MTT3 80 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 WRBO00258 174 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 MED6O75586 246 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 SCAF4O95104 1147 aaKnown RBP6.71□□□□□ -1.34
TRIM28-214ENST00000600840 SEC11BP0C7V7 166 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 IAPPP10997 89 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 RUNX1Q01196 453 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 DEFA5Q01523 94 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF266Q14584 549 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF343Q6P1L6 599 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 HAPLN4Q86UW8 402 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 NECAP1Q8NC96 275 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 MUC7Q8TAX7 377 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 RAB40CQ96S21 281 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 SLC25A31Q9H0C2 315 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 HEYLQ9NQ87 328 aaPredicted RBP6.71□□□□□ -1.34
TRIM28-214ENST00000600840 OR5AC2Q9NZP5 309 aa6.71□□□□□ -1.34
TRIM28-214ENST00000600840 MRPL36Q9P0J6 103 aaKnown RBP6.71□□□□□ -1.34
TRIM28-214ENST00000600840 STRAPQ9Y3F4 350 aaKnown RBP6.71□□□□□ -1.34
TRIM28-214ENST00000600840 LSM4Q9Y4Z0 139 aaKnown RBP6.71□□□□□ -1.34
TRIM28-214ENST00000600840 DYNC2H1Q8NCM8 4307 aaKnown RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 FAM223BA6NKX1 122 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 OR2J3O76001 311 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 LY86O95711 162 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 TRGV3P03979 118 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 HIST1H1BP16401 226 aaKnown RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 FCGR2BP31994 310 aaPredicted RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 HOXA1P49639 335 aaPredicted RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 SULT1A2P50226 295 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 RHOGP84095 191 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 BAXQ07812 192 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 ARL16Q0P5N6 197 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 FHL3Q13643 280 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 SLC25A24Q6NUK1 477 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 FAM223AQ8IWN6 122 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 SVBPQ8N300 66 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 SLC24A4Q8NFF2 622 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 OR1L6Q8NGR2 347 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 VN1R17PQ8TDU5 208 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 USMG5Q96IX5 58 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 CCDC140Q96MF4 163 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 CIB3Q96Q77 187 aaPredicted RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 OR5B12Q96R08 314 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 ASCL2Q99929 193 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 MCRIP2Q9BUT9 160 aaKnown RBP6.7□□□□□ -1.34
TRIM28-214ENST00000600840 ARV1Q9H2C2 271 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 HIPK2Q9H2X6 1198 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 SMDT1Q9H4I9 107 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 CYTL1Q9NRR1 136 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 FBXL7Q9UJT9 491 aa6.7□□□□□ -1.34
TRIM28-214ENST00000600840 UMAD1C9J7I0 102 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 SSSCA1O60232 199 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 NPY1RP25929 384 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 SNCAP37840 140 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 C15orf32Q32M92 178 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 TMEM252Q8N6L7 170 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 OR11H1Q8NG94 326 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF502Q8TBZ5 544 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 RNASEH2CQ8TDP1 164 aaKnown RBP6.69□□□□□ -1.34
TRIM28-214ENST00000600840 C4orf3Q8WVX3 66 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 DPF1Q92782 380 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 ATP6V0BQ99437 205 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 PSENENQ9NZ42 101 aa6.69□□□□□ -1.34
TRIM28-214ENST00000600840 LSM5Q9Y4Y9 91 aaKnown RBP6.69□□□□□ -1.34
TRIM28-214ENST00000600840 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 A0A0G2JLM5 398 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 IGSF23A1L1A6 192 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 FAM24AA6NFZ4 105 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF705EA8MWA4 302 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SEC14L6B5MCN3 397 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 H3BP45 60 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SNAPINO95295 136 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SCGB1D2O95969 90 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 MT-CO2P00403 227 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 IFNA10P01566 189 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 TRBV12-3P01733 135 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 CTSGP08311 255 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 LGALS1P09382 135 aaKnown RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 NHLRC4P0CG21 123 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 DEFA4P12838 97 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 GPX4P36969 197 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SUB1P53999 127 aaKnown RBP eCLIP6.68□□□□□ -1.343e-15■□□□□ 11.1
TRIM28-214ENST00000600840 TPPP2P59282 170 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 VAMP2P63027 116 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 ATP5G2Q06055 141 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SPANXN5Q5MJ07 72 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 C9orf66Q5T8R8 295 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 DPPA3Q6W0C5 159 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 TMEM116Q8NCL8 245 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 CACNG8Q8WXS5 425 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 GNPNAT1Q96EK6 184 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 BSCL2Q96G97 398 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 LINC00052Q96N35 136 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 GINS3Q9BRX5 216 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 SEC11CQ9BY50 192 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 GPR61Q9BZJ8 451 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms